RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TAS2R40P59535 323 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 FAM193AP78312 1265 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 RAD51Q06609 339 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 STAT4Q14765 748 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 HADHQ16836 314 aaKnown RBP12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF423Q2M1K9 1284 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 PRAMEF14Q5SWL7 426 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 SEL1L3Q68CR1 1132 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 GDPD4Q6W3E5 623 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 DBX2Q6ZNG2 339 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 GAS2L3Q86XJ1 694 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 LZTR1Q8N653 840 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 TC2NQ8N9U0 490 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 MFSD2AQ8NA29 543 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC35G2Q8TBE7 412 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 FAM71BQ8TC56 605 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 SKA1Q96BD8 255 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 EXOC2Q96KP1 924 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 OSBPL1AQ9BXW6 950 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 CPEB1Q9BZB8 566 aaKnown RBP12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 CA5BQ9Y2D0 317 aa12.92□□□□□ -0.34
PRPF40A-203ENST00000448428 CABIN1Q9Y6J0 2220 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 SPAARA0A1B0GVQ0 90 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 PRAMEF26H0Y7S4 382 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 AP1G1O43747 822 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 CD48P09326 243 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 ABL2P42684 1182 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 CDH6P55285 790 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 IL10RBQ08334 325 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 MMRN1Q13201 1228 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 KRT81Q14533 505 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 TMEM259Q4ZIN3 620 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC45A4Q5BKX6 768 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 TMCO3Q6UWJ1 677 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 TTC7BQ86TV6 843 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 NAXDQ8IW45 347 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 TSEN2Q8NCE0 465 aaKnown RBP12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 RAB7BQ96AH8 199 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 FEM1CQ96JP0 617 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 SP110Q9HB58 689 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 IPO11Q9UI26 975 aaKnown RBP12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 PCDHGB2Q9Y5G2 931 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 SPTBN2O15020 2390 aa12.91□□□□□ -0.34
PRPF40A-203ENST00000448428 LRRK1Q38SD2 2015 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 TMEM110-MUSTN1A8MSY1 372 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SPINT1O43278 529 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 TSPAN6O43657 245 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 DFNA5O60443 496 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 BUB1BO60566 1050 aaPredicted RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 CBFA2T3O75081 653 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 TIMP2P16035 220 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 ITIH2P19823 946 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 PMLP29590 882 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 GJC1P36383 396 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 RGRP47804 291 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 ZNF75DP51815 510 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 NXPH1P58417 271 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 RPS21P63220 83 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 IL9RQ01113 521 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 DPYSL3Q14195 570 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 FGL2Q14314 439 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 MESDQ14696 234 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SHBQ15464 509 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 KIAA1161Q6NSJ0 714 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SRLQ86TD4 932 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 IQCHQ86VS3 1027 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SPATS2Q86XZ4 545 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 TMEM145Q8NBT3 493 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 KCTD6Q8NC69 237 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SETD7Q8WTS6 366 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 ELF4Q99607 663 aaPredicted RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 MYOCQ99972 504 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 SLC17A9Q9BYT1 436 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 FZD3Q9NPG1 666 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 RCOR3Q9P2K3 495 aaPredicted RBP12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 DKK3Q9UBP4 350 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 GGT7Q9UJ14 662 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 ITM2BQ9Y287 266 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 PCDHB9Q9Y5E1 797 aa12.9□□□□□ -0.34
PRPF40A-203ENST00000448428 TDRD6O60522 2096 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 A0A1B0GTQ1 180 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 IGLON5A6NGN9 336 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 NEMP1O14524 444 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 AREL1O15033 823 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 MUSKO15146 869 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 PCDHGA12O60330 932 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 MAFKO60675 156 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 PIGNO95427 931 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 PEX11BO96011 259 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 PAK4O96013 591 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 AKT2P31751 481 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 MAN1A1P33908 653 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 CSNK1DP48730 415 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 CLDN2P57739 230 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 SIM1P81133 766 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 NSUN2Q08J23 767 aaKnown RBP eCLIP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 SLC10A7Q0GE19 358 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 OVGP1Q12889 678 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 HNRNPDQ14103 355 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 RFTN1Q14699 578 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms