RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 TRIM38O00635 465 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 FPGTO14772 594 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 BRINP1O60477 761 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 PIAS2O75928 621 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 MT-CO3P00414 261 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CTSLP07711 333 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 ADRB3P13945 408 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 UCHL3P15374 230 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 TFE3P19532 575 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 XPAP23025 273 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 EEF1GP26641 437 aaKnown RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 ERCC5P28715 1186 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 CDH5P33151 784 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 FLT3P36888 993 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 EIF2S3P41091 472 aaKnown RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 RABIFP47224 123 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 GABRB2P47870 512 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 MAPKAPK2P49137 400 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CCNHP51946 323 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 THOP1P52888 689 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CLDN2P57739 230 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 TAS2R38P59533 333 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 RAD51Q06609 339 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CCDC173Q0VFZ6 552 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CLN3Q13286 438 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 RTP5Q14D33 572 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CDO1Q16878 200 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CARD16Q5EG05 197 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 KLHDC7AQ5VTJ3 777 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 OTUD1Q5VV17 481 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 BROXQ5VW32 411 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 SEL1L3Q68CR1 1132 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 KYAT3Q6YP21 454 aaKnown RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 RIPOR1Q6ZS17 1223 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 Q6ZSR6 202 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 ABI3BPQ7Z7G0 1075 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 PARGQ86W56 976 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 ZNF677Q86XU0 584 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 IRF2BP1Q8IU81 584 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 LSMEM2Q8N112 164 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 PAF1Q8N7H5 531 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 DCBLD1Q8N8Z6 715 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 ANKRD20A12PQ8NF67 263 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 MAPK15Q8TD08 544 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CPA5Q8WXQ8 436 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 GLMNQ92990 594 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 RAB7BQ96AH8 199 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 ARRDC3Q96B67 414 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 IFT43Q96FT9 208 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 FCRL3Q96P31 734 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 NUP62CLQ9H1M0 184 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 CLSTN2Q9H4D0 955 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 METTL5Q9NRN9 209 aaKnown RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 UCKL1Q9NWZ5 548 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 NLGN3Q9NZ94 848 aa7.9□□□□□ -1.14
VPS50-204ENST00000438395 HECAQ9UBI9 543 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 AJAP1Q9UKB5 411 aaPredicted RBP7.9□□□□□ -1.14
VPS50-204ENST00000438395 ZNF462Q96JM2 2506 aa7.9□□□□□ -1.15
VPS50-204ENST00000438395 SPTA1P02549 2419 aa7.9□□□□□ -1.15
VPS50-204ENST00000438395 COL5A1P20908 1838 aaPredicted RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 IGLV3-10A0A075B6K4 115 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 CPED1A4D0V7 1026 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ZSCAN5CA6NGD5 496 aaPredicted RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 C10orf142B7Z368 130 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 TSPAN6O43657 245 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 AP1G1O43747 822 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 KALRNO60229 2985 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 OPA1O60313 960 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 RAMP2O60895 175 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 IL2RAP01589 272 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 GP1BAP07359 652 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 CKMT1AP12532 417 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ITPKBP27987 946 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 L1CAMP32004 1257 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 NSFP46459 744 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 UCNP55089 124 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 PCBP4P57723 403 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 SNRPD1P62314 119 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 NOMO3P69849 1222 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 PDE1CQ14123 709 aaPredicted RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 TBC1D25Q3MII6 688 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 DPCR1Q3MIW9 517 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 C2CD6Q53TS8 623 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ZNF542PQ5EBM4 170 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 CFAP58Q5T655 872 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ZCCHC8Q6NZY4 707 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 TRIM72Q6ZMU5 477 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 GCNT7Q6ZNI0 430 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 PARS2Q7L3T8 475 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 ARCQ7LC44 396 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 KANSL1Q7Z3B3 1105 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 CACTIN-AS1Q8N1I8 211 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 SLC25A45Q8N413 288 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 DENND6BQ8NEG7 585 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ZNF548Q8NEK5 533 aaPredicted RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 OR6K2Q8NGY2 324 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 RFFLQ8WZ73 363 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 NT5C3BQ969T7 300 aa7.89□□□□□ -1.15
VPS50-204ENST00000438395 ISG20Q96AZ6 181 aaKnown RBP7.89□□□□□ -1.15
VPS50-204ENST00000438395 TBC1D31Q96DN5 1066 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms