RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 VIPAS39Q9H9C1 493 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 NINJ2Q9NZG7 142 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 LHX3Q9UBR4 397 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 ERVW-1Q9UQF0 538 aa17.34■□□□□ 0.37
CCDC28B-202ENST00000421922 COL4A3Q01955 1670 aa17.33■□□□□ 0.37
CCDC28B-202ENST00000421922 TTC24A2A3L6 582 aaPredicted RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 K7ERQ8 282 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 TRIM24O15164 1050 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ALOX15BO15296 676 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 AVILO75366 819 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 BANF1O75531 89 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 TTC4O95801 387 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 CD160O95971 181 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 APODP05090 189 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 GJA4P35212 333 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 EIF2DP41214 584 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ELK3P41970 407 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 GRIA1P42261 906 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 NPY2RP49146 381 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 RAD51Q06609 339 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 KYNUQ16719 465 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 MSS51Q4VC12 460 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ALS2CLQ60I27 953 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 KDELC1Q6UW63 502 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ZNF534Q76KX8 674 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 KDELC2Q7Z4H8 507 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 KIAA0907Q7Z7F0 614 aaPredicted RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 SRLQ86TD4 932 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ADIPOR2Q86V24 386 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 KLHDC8BQ8IXV7 354 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 PCDH20Q8N6Y1 951 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 STAMBPL1Q96FJ0 436 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 MRGPRX2Q96LB1 330 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 CCDC77Q9BR77 488 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 RPP25Q9BUL9 199 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 FUT8Q9BYC5 575 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 NOD2Q9HC29 1040 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 CASS4Q9NQ75 786 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 PIH1D1Q9NWS0 290 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 ZNF446Q9NWS9 450 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 PLA2G4CQ9UP65 541 aa17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.33■□□□□ 0.36
CCDC28B-202ENST00000421922 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 OTOL1A6NHN0 477 aaPredicted RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 RIPK2O43353 540 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 SMAD6O43541 496 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 TIMM44O43615 452 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 BNIP3LO60238 219 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 SPAG6O75602 509 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 AGTP01019 485 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 SRPRAP08240 638 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 MMP2P08253 660 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 DLDP09622 509 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 CISD3P0C7P0 127 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 HLA-DPA1P20036 260 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 MGAT1P26572 445 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 RGRP47804 291 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 SLC6A11P48066 632 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 CDK18Q07002 472 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 OLIG2Q13516 323 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 FASTKD3Q14CZ7 662 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 AAK1Q2M2I8 961 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 PUS10Q3MIT2 529 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 LEXMQ3ZCV2 418 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 ATXN7L2Q5T6C5 722 aaPredicted RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 CAPN12Q6ZSI9 719 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 CCNJLQ8IV13 435 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 SLC25A41Q8N5S1 370 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 GOLGA6L1Q8N7Z2 621 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 TERB1Q8NA31 727 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 CYB5D2Q8WUJ1 264 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 ISG20Q96AZ6 181 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 FEM1CQ96JP0 617 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 NAT9Q9BTE0 207 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 ZC3H7BQ9UGR2 993 aaKnown RBP17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 RAPGEFL1Q9UHV5 662 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 PLAAQ9Y263 795 aa17.32■□□□□ 0.36
CCDC28B-202ENST00000421922 A0A087WUV0 522 aaPredicted RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 TBC1D3BA6NDS4 549 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 GSRP00390 522 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 FGF1P05230 155 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 TSHRP16473 764 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 CR2P20023 1033 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 MAGEA3P43357 314 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 E2F5Q15329 346 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 DLG2Q15700 870 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 SMAD2Q15796 467 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 UAP1Q16222 522 aaPredicted RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 FNDC3BQ53EP0 1204 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 TJAP1Q5JTD0 557 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 PTCRAQ6ISU1 281 aaPredicted RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 PPHLN1Q8NEY8 458 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 OR2AP1Q8NGE2 309 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 PDCD6IPQ8WUM4 868 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 EBNA1BP2Q99848 306 aaKnown RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 ADGRE3Q9BY15 652 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 IL22Q9GZX6 179 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 TNKS2Q9H2K2 1166 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 ATP13A3Q9H7F0 1226 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 ELOVL2Q9NXB9 296 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms