RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 PYGLP06737 847 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 HSPA1AP0DMV8 641 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 HSPA1BP0DMV9 641 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 SNX16P57768 344 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 RPL26P61254 145 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 USP10Q14694 798 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 MGAT5BQ3V5L5 792 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 FSCBQ5H9T9 825 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 LDLRAD1Q5T700 205 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 OLFML2BQ68BL8 750 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 PKN3Q6P5Z2 889 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 KLHDC10Q6PID8 442 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 BNC2Q6ZN30 1099 aaPredicted RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 RBM44Q6ZP01 1051 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 PCDH20Q8N6Y1 951 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 GPRC5AQ8NFJ5 357 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 DCPSQ96C86 337 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 TSGA13Q96PP4 275 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 PKMYT1Q99640 499 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 FAM96AQ9H5X1 160 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 APPL1Q9UKG1 709 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 SLC4A7Q9Y6M7 1214 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 PRORSD1PA6NEY8 169 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 BTBD19C9JJ37 291 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 F8W810 466 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 DLGAP1O14490 977 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 GJB3O75712 270 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 FLOT2Q14254 428 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 GRB14Q14449 540 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 DGKDQ16760 1214 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 SV2CQ496J9 727 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 MANEALQ5VSG8 457 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 LRRTM3Q86VH5 581 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 SPATA24Q86W54 205 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 CHERPQ8IWX8 916 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 SCAMP5Q8TAC9 235 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 LPPQ93052 612 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 MRGPRX2Q96LB1 330 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 C3orf30Q96M34 536 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 NOL6Q9H6R4 1146 aaKnown RBP9.98□□□□□ -0.81
SS18-203ENST00000415083 CD300AQ9UGN4 299 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 GBF1Q92538 1859 aa9.98□□□□□ -0.81
SS18-203ENST00000415083 TTC24A2A3L6 582 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 HAS3O00219 553 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 HLA-DQB2P05538 268 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RANBP1P43487 201 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 PSMD8P48556 350 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 CTBSQ01459 385 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RALGDSQ12967 914 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 CNGA3Q16281 694 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 BTBD8Q5XKL5 378 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 GPR142Q7Z601 462 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 ZNF467Q7Z7K2 595 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 FUNDC1Q8IVP5 155 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SIX6OS1Q8N1H7 587 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 OR9I1Q8NGQ6 314 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 STON2Q8WXE9 905 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 TMIGD2Q96BF3 282 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 TNIP3Q96KP6 325 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SENP8Q96LD8 212 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 CNBD2Q96M20 576 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 ZNF560Q96MR9 790 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 IL12RB2Q99665 862 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SLC39A8Q9C0K1 460 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 LRRC4Q9HBW1 653 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 CSNK1G1Q9HCP0 422 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SARDHQ9UL12 918 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 FAM95CA0A1B0GW59 222 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 PPP6CO00743 305 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 TADA2AO75478 443 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 FAM200BP0CF97 657 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 NELFEP18615 380 aaKnown RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 CDH17Q12864 832 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RFTN1Q14699 578 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 HERC3Q15034 1050 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 TECRLQ5HYJ1 363 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 KDELC2Q7Z4H8 507 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 ST13P4Q8IZP2 240 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 C2CD4AQ8NCU7 369 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 ICA1LQ8NDH6 482 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RDH11Q8TC12 318 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 ZNF696Q9H7X3 374 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 STAP1Q9ULZ2 295 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 A0A1B0GTL3 188 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 PDHXO00330 501 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 CCL22O00626 93 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 DYNC1LI2O43237 492 aaPredicted RBP9.97□□□□□ -0.81
SS18-203ENST00000415083 DDHD2O94830 711 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SLC5A2P31639 672 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 RAB10P61026 200 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 PRKAA1Q13131 559 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SLC12A1Q13621 1099 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SH2D4BQ5SQS7 431 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 C14orf80Q86SX3 495 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 GALNT4Q8N4A0 578 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 B4GALNT2Q8NHY0 566 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 LRTOMTQ8WZ04 291 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 SLC39A3Q9BRY0 314 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 MED10Q9BTT4 135 aa9.97□□□□□ -0.81
SS18-203ENST00000415083 GRIP2Q9C0E4 1043 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms