RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 RABGEF1Q9UJ41 708 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 TCRBV9S1A1TA0A576 114 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 OAS2P29728 719 aaKnown RBP27.14■■□□□ 1.93
MSX1-201ENST00000382723 CES3Q6UWW8 571 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 ADIPOR2Q86V24 386 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 TTC8Q8TAM2 541 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 MRRFQ96E11 262 aaKnown RBP27.14■■□□□ 1.93
MSX1-201ENST00000382723 ECT2Q9H8V3 914 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 TMBIM4Q9HC24 238 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 HPS4Q9NQG7 708 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 OGFRQ9NZT2 677 aa27.14■■□□□ 1.93
MSX1-201ENST00000382723 USP15Q9Y4E8 981 aaPredicted RBP27.14■■□□□ 1.93
MSX1-201ENST00000382723 PGAM1P18669 254 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 DGKGP49619 791 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 FCHO2Q0JRZ9 810 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 POU6F1Q14863 301 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 EFTUD2Q15029 972 aaKnown RBP eCLIP27.13■■□□□ 1.936e-7■■■■■ 47.1
MSX1-201ENST00000382723 GEN1Q17RS7 908 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 TTMPQ5BVD1 217 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 KRT222Q8N1A0 295 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 MYLIPQ8WY64 445 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 TMEM109Q9BVC6 243 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 IL22Q9GZX6 179 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 CD207Q9UJ71 328 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 SLC25A13Q9UJS0 675 aa27.13■■□□□ 1.93
MSX1-201ENST00000382723 POC1B-GALNT4F8VUJ3 575 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 RRP9O43818 475 aaKnown RBP27.12■■□□□ 1.93
MSX1-201ENST00000382723 SPAG6O75602 509 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 CDK18Q07002 472 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 SLC20A2Q08357 652 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 DMC1Q14565 340 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 TMEM215Q68D42 235 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 MBLAC2Q68D91 279 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 KCTD16Q68DU8 428 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 AHI1Q8N157 1196 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 ELSPBP1Q96BH3 223 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 ROPN1BQ9BZX4 212 aaPredicted RBP27.12■■□□□ 1.93
MSX1-201ENST00000382723 TNKS2Q9H2K2 1166 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 ROPN1Q9HAT0 212 aaPredicted RBP27.12■■□□□ 1.93
MSX1-201ENST00000382723 FBXO10Q9UK96 956 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 RNF40O75150 1001 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 SRCP12931 536 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 PSMC3P17980 439 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 CES1P23141 567 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 ECT2LQ008S8 904 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 NSUN2Q08J23 767 aaKnown RBP eCLIP27.12■■□□□ 1.93
MSX1-201ENST00000382723 SLC1A5Q15758 541 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 SIRPB2Q5JXA9 342 aa27.12■■□□□ 1.93
MSX1-201ENST00000382723 DDX51Q8N8A6 666 aaKnown RBP eCLIP27.12■■□□□ 1.93
MSX1-201ENST00000382723 RPP25Q9BUL9 199 aaKnown RBP27.12■■□□□ 1.93
MSX1-201ENST00000382723 LOC285095A0A1B0GVY8 99 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 TULP3O75386 442 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 IVLP07476 585 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 CISD3P0C7P0 127 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 POLR2EP19388 210 aaKnown RBP27.11■■□□□ 1.93
MSX1-201ENST00000382723 CCDC85BQ15834 202 aaPredicted RBP27.11■■□□□ 1.93
MSX1-201ENST00000382723 KIAA0907Q7Z7F0 614 aaPredicted RBP27.11■■□□□ 1.93
MSX1-201ENST00000382723 CCNJLQ8IV13 435 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 OR6K2Q8NGY2 324 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 GSDMBQ8TAX9 411 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 NECTIN4Q96NY8 510 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 NAT9Q9BTE0 207 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 ACSS3Q9H6R3 686 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 CHRAC1Q9NRG0 131 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 PCDHGC4Q9Y5F7 938 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 RPS6KL1Q9Y6S9 549 aa27.11■■□□□ 1.93
MSX1-201ENST00000382723 GOLGA8KD6RF30 607 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 POLBP06746 335 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 STX2P32856 288 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SLC6A11P48066 632 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SULT2A1Q06520 285 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 GALNT3Q14435 633 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 ACCSLQ4AC99 568 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 DGKKQ5KSL6 1271 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SORCS1Q8WY21 1168 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 FEM1CQ96JP0 617 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 ARNT2Q9HBZ2 717 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 CTNNAL1Q9UBT7 734 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 CHKBQ9Y259 395 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 HS3ST2Q9Y278 367 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 CCDC78A2IDD5 438 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 GSTA2P09210 222 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 ATXN1LP0C7T5 689 aaKnown RBP27.1■■□□□ 1.93
MSX1-201ENST00000382723 CRYMQ14894 314 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 GAB4Q2WGN9 574 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 STEAP4Q687X5 459 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 TRMT10BQ6PF06 316 aaKnown RBP27.1■■□□□ 1.93
MSX1-201ENST00000382723 NCEH1Q6PIU2 408 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SRLQ86TD4 932 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 METTL3Q86U44 580 aaKnown RBP27.1■■□□□ 1.93
MSX1-201ENST00000382723 CYTH2Q99418 400 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 CIPCQ9C0C6 399 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 GTSE1Q9NYZ3 720 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SLCO3A1Q9UIG8 710 aa27.1■■□□□ 1.93
MSX1-201ENST00000382723 SPTBN5Q9NRC6 3674 aaKnown RBP27.09■■□□□ 1.93
MSX1-201ENST00000382723 TCEA3O75764 348 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 GDI1P31150 447 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 SMAD1Q15797 465 aaKnown RBP27.09■■□□□ 1.93
MSX1-201ENST00000382723 KLHL38Q2WGJ6 581 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 KBTBD12Q3ZCT8 623 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms