RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 C19orf25Q9UFG5 118 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 OAS3Q9Y6K5 1087 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RPS6KL1Q9Y6S9 549 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 BTBD19C9JJ37 291 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RTCAO00442 366 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 TCN1P20061 433 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 PBLDP30039 288 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 CHRNB4P30926 498 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 CCR1P32246 355 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 CD151P48509 253 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RGS19P49795 217 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ZNF135P52742 658 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ITGA8P53708 1063 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ATP12AP54707 1039 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 COPZ1P61923 177 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 NCOA4Q13772 614 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ACAP1Q15027 740 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 UBASH3BQ8TF42 649 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 PANX3Q96QZ0 392 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 VPS25Q9BRG1 176 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 PCDH18Q9HCL0 1135 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ZNF223Q9UK11 482 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ABCG2Q9UNQ0 655 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 SCAF8Q9UPN6 1271 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ZNF451Q9Y4E5 1061 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 TRPC5OSA6NMA1 111 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 KPNA5O15131 536 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RPS2P15880 293 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 FGFR4P22455 802 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 COPAP53621 1224 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 CRYBB1P53674 252 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 DSTNP60981 165 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 MADCAM1Q13477 382 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ITGA9Q13797 1035 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 SMCO1Q147U7 214 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 KCNA10Q16322 511 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 EIF2S3LQ2VIR3 472 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 GRAMD1CQ8IYS0 662 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RNFT2Q96EX2 444 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 ZFRQ96KR1 1074 aaKnown RBP8.72□□□□□ -1.01
SYNE1-206ENST00000367253 RBBP8Q99708 897 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 MRIQ9BWK5 157 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 LRCH1Q9Y2L9 728 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 PTCH2Q9Y6C5 1203 aa8.72□□□□□ -1.01
SYNE1-206ENST00000367253 SMCO3A2RU48 225 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 CCDC154A6NI56 674 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 TGM2P21980 687 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 PPP4CP60510 307 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 LRRC74AQ0VAA2 488 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 DOK6Q6PKX4 331 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 IL27RAQ6UWB1 636 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 UBR7Q8N806 425 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ZNF597Q96LX8 424 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 MTMR12Q9C0I1 747 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 HMG20AQ9NP66 347 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 SERHLQ9NQF3 203 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 SLC45A1Q9Y2W3 748 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 TULP2O00295 520 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 AP5Z1O43299 807 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 KDM4BO94953 1096 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ASLP04424 464 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ACRP10323 421 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 JUNDP17535 347 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 OXTRP30559 389 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 HOXA10P31260 410 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-206ENST00000367253 HOXC8P31273 242 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 CLCN3P51790 818 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ACSM2AQ08AH3 577 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 CRHR2Q13324 411 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 SNTA1Q13424 505 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 TCHHL1Q5QJ38 904 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-206ENST00000367253 PERM1Q5SV97 790 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 CCNI2Q6ZMN8 369 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-206ENST00000367253 SSX9Q7RTT3 188 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 GKN2Q86XP6 184 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ADSSL1Q8N142 457 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 PROM2Q8N271 834 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 KREMEN2Q8NCW0 462 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 NSUN4Q96CB9 384 aaKnown RBP8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ERLEC1Q96DZ1 483 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 KLHL5Q96PQ7 755 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 NIF3L1Q9GZT8 377 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 C3orf14Q9HBI5 128 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 SLAMF7Q9NQ25 335 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 CATSPERZQ9NTU4 200 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 ZNF112Q9UJU3 913 aa8.71□□□□□ -1.01
SYNE1-206ENST00000367253 STK36Q9NRP7 1315 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 DNM1LO00429 736 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 VWA5AO00534 786 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 RNASEH2AO75792 299 aaKnown RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 SGPL1O95470 568 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF286BP0CG31 522 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 GRM2Q14416 872 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ALX1Q15699 326 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 FBXO43Q4G163 708 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 SPANXN2Q5MJ10 180 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 SPDYAQ5MJ70 313 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 PCNX4Q63HM2 1172 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 SYDE1Q6ZW31 735 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 GRPEL2Q8TAA5 225 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms