RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PRLRP16471 622 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 EEF1B2P24534 225 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 SOX11P35716 441 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RASSF2P50749 326 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 FAM98BQ52LJ0 330 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 CBWD3Q5JTY5 395 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CBWD5Q5RIA9 395 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PLEKHM3Q6ZWE6 761 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SPEM1Q8N4L4 309 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 VN1R2Q8NFZ6 395 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PIGOQ8TEQ8 1089 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PLD4Q96BZ4 506 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CNDP2Q96KP4 475 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 NSMCE3Q96MG7 304 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MAP3K14Q99558 947 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RANBP17Q9H2T7 1088 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 PARVAQ9NVD7 372 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DKKL1Q9UK85 242 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PHF24Q9UPV7 400 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PCDHGA6Q9Y5G7 932 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 GLI2P10070 1586 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ASTN1O14525 1302 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DRGXA6NNA5 263 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 A6NNZ2 444 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 E7ENX8 843 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDH16O75309 829 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CD2BP2O95400 341 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 IL1AP01583 271 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RARGP13631 454 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 IL32P24001 234 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CYP2F1P24903 491 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SLC19A1P41440 591 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RABIFP47224 123 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDH6P55285 790 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 UBE2HP62256 183 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TAP2Q03519 686 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MSLNQ13421 630 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 KIF19Q2TAC6 998 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HSDL1Q3SXM5 330 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 POM121L1PQ3SYA9 428 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TEDDM1Q5T9Z0 273 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CACHD1Q5VU97 1274 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ENPP7Q6UWV6 458 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MON1BQ7L1V2 547 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 NUP54Q7Z3B4 507 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 KRT73Q86Y46 540 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 GDPD5Q8WTR4 605 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 NCSTNQ92542 709 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 OTULINQ96BN8 352 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDX2Q99626 313 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 PACSIN1Q9BY11 444 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 FAM49BQ9NUQ9 324 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HSPBP1Q9NZL4 362 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SIRPGQ9P1W8 387 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 WASF3Q9UPY6 502 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MRPS2Q9Y399 296 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 HEY1Q9Y5J3 304 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TIMM13Q9Y5L4 95 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 CLCA3PQ9Y6N3 262 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ASXL1Q8IXJ9 1541 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 FTCDNL1E5RQL4 147 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PPEF2O14830 753 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 KCNJ13O60928 360 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CSDE1O75534 798 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ITGB3P05106 788 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 UMPSP11172 480 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TM4SF1P30408 202 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CDK18Q07002 472 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PCDH1Q08174 1060 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PDE7AQ13946 482 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 AAGABQ6PD74 315 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 FBXO38Q6PIJ6 1188 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RBM44Q6ZP01 1051 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 LOXL4Q96JB6 756 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CADM1Q9BY67 442 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 NXT1Q9UKK6 140 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 KCNJ14Q9UNX9 436 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ASF1AQ9Y294 204 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.13□□□□□ -1.75
USH2A-202ENST00000366942 COL1A1P02452 1464 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 E2F8A0AVK6 867 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MIF4GDA9UHW6 222 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 F8VP50 259 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 E2F6O75461 281 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 SEMA4FO95754 770 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 HLA-DPA1P20036 260 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCNE1P24864 410 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 KIR2DL3P43628 341 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCT5P48643 541 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CLCN5P51795 746 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CASP9P55211 416 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 STXBP1P61764 594 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 RBM10P98175 930 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 POU4F1Q01851 419 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 POU5F1BQ06416 359 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 LAPTM5Q13571 262 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 TAF5Q15542 800 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MAN2A1Q16706 1144 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GRAMD1BQ3KR37 738 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms