RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KCTD10Q9H3F6 313 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 CST1P01037 141 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 CD2P06729 351 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 FSCN1Q16658 493 aaKnown RBP12.71□□□□□ -0.38
COL6A3-203ENST00000353578 ANGEL2Q5VTE6 544 aaKnown RBP12.71□□□□□ -0.38
COL6A3-203ENST00000353578 AMIGO2Q86SJ2 522 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 TRABD2AQ86V40 505 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 AGAP3Q96P47 875 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 S100A3P33764 101 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 THOP1P52888 689 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PRKCQQ04759 706 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 GMCL1Q96IK5 515 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHA6Q9UN73 950 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHA8Q9Y5H6 950 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PMF1-BGLAPU3KQ54 211 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 DCKP27707 260 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 OMPP47874 163 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ASB12Q8WXK4 309 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 KAT2BQ92831 832 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 VPS51Q9UID3 782 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 GRSF1Q12849 480 aaKnown RBP eCLIP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 NME3Q13232 169 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 STYK1Q6J9G0 422 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 TSEN2Q8NCE0 465 aaKnown RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 VANGL1Q8TAA9 524 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 SLC47A1Q96FL8 570 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 MGME1Q9BQP7 344 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 MKS1Q9NXB0 559 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 GRHL1Q9NZI5 618 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 USP20Q9Y2K6 914 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 RLN1P04808 185 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 CMTR2Q8IYT2 770 aaKnown RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 A0A096LPK6 155 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ATP5F1P24539 256 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 GCNT1Q02742 428 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ASB14A6NK59 587 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PDCD5O14737 125 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 RPN2P04844 631 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ELK3P41970 407 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 CDK8P49336 464 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 RPL10AP62906 217 aaKnown RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 TRIM40Q6P9F5 258 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 SPOCD1Q6ZMY3 1216 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 FRMD6Q96NE9 622 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF607Q96SK3 696 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHA10Q9Y5I2 948 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 SERPINB7O75635 380 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 PRKACAP17612 351 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 IL6STP40189 918 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF548Q8NEK5 533 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 SLC16A4O15374 487 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 FTH1P02794 183 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF14P17017 642 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 DEFA5Q01523 94 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 CST11Q9H112 138 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF302Q9NR11 478 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 ANKEF1Q9NU02 776 aa12.7□□□□□ -0.38
COL6A3-203ENST00000353578 SAMHD1Q9Y3Z3 626 aaKnown RBP12.7□□□□□ -0.38
COL6A3-203ENST00000353578 CACNA1CQ13936 2221 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 IFNGP01579 166 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 RPLP2P05387 115 aaKnown RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ARHGEF7Q14155 803 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ANKRD23Q86SG2 305 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 TBC1D10CQ8IV04 446 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ACTL9Q8TC94 416 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 NSUN6Q8TEA1 469 aaKnown RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PTTG3PQ9NZH4 202 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MOSPD1Q9UJG1 213 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MYO3AQ8NEV4 1616 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 HECW2Q9P2P5 1572 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF99A8MXY4 864 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ADORA1P30542 326 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 GPR15P49685 360 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MYBPC3Q14896 1274 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MTERF2Q49AM1 385 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ANKDD1BA6NHY2 528 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHGA12O60330 932 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 COL6A2P12110 1019 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 RENBPP51606 427 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 SULT2A1Q06520 285 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF234Q14588 700 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 HERC6Q8IVU3 1022 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PTCD2Q8WV60 388 aaKnown RBP12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ANGPTL1O95841 491 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 MAGEA12P43365 314 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 CYP4F8P98187 520 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 AKIRIN2Q53H80 203 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 NELL1Q92832 810 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PNMA3Q9UL41 463 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 SIK3Q9Y2K2 1263 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 SUV39H1O43463 412 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 SGTAO43765 313 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 NMT2O60551 498 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PGS1Q32NB8 556 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 WDR72Q3MJ13 1102 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 DCAF6Q58WW2 860 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 ZBTB33Q86T24 672 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 CRISPLD1Q9H336 500 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 CYP3A43Q9HB55 503 aa12.69□□□□□ -0.38
COL6A3-203ENST00000353578 PHF24Q9UPV7 400 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms