RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 A0A096LPK6 155 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 HEATR9A2RTY3 570 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 SOBPA7XYQ1 873 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 C9IYK1 514 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 MAGEB3O15480 346 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 HTRA2O43464 458 aaPredicted RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 HSPA8P11142 646 aaKnown RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 COL6A2P12110 1019 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 SCNN1AP37088 669 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 ENTPD1P49961 510 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 NDST2P52849 883 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 RELAQ04206 551 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 SLC10A2Q12908 348 aaPredicted RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 ZBTB17Q13105 803 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PPM1JQ5JR12 505 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 LIMS2Q7Z4I7 341 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 CLVS1Q8IUQ0 354 aaPredicted RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 SMG8Q8ND04 991 aaKnown RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PPP1R13LQ8WUF5 828 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 NT5C1AQ9BXI3 368 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 SEZ6LQ9BYH1 1024 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 NGRNQ9NPE2 291 aaKnown RBP16.05■□□□□ 0.16
HMGA1-202ENST00000347617 TMED5Q9Y3A6 229 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 PSAT1Q9Y617 370 aa16.05■□□□□ 0.16
HMGA1-202ENST00000347617 MYOCOSA0A1B0GUC4 107 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 TRIM64BA6NI03 449 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 XPO1O14980 1071 aaKnown RBP16.04■□□□□ 0.16
HMGA1-202ENST00000347617 GRID2O43424 1007 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 CHRNA1P02708 482 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 BMP2P12643 396 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 ELNP15502 786 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 MYF6P23409 242 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 LRPAP1P30533 357 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 POLD2P49005 469 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 CDH8P55286 799 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 PFKPQ01813 784 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 NSUN2Q08J23 767 aaKnown RBP eCLIP16.04■□□□□ 0.16
HMGA1-202ENST00000347617 CDO1Q16878 200 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 PPM1LQ5SGD2 360 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 INTS11Q5TA45 600 aaKnown RBP16.04■□□□□ 0.16
HMGA1-202ENST00000347617 SH3PXD2AQ5TCZ1 1133 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 TRNP1Q6NT89 227 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 DPH6Q7L8W6 267 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 MRPL10Q7Z7H8 261 aaKnown RBP16.04■□□□□ 0.16
HMGA1-202ENST00000347617 AFAP1L2Q8N4X5 818 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 COLGALT1Q8NBJ5 622 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 PDPRQ8NCN5 879 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 URGCPQ8TCY9 931 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 CD99L2Q8TCZ2 262 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 THAP11Q96EK4 314 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 ZNF560Q96MR9 790 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 LRRC4Q9HBW1 653 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 ARMC1Q9NVT9 282 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 ST3GAL5Q9UNP4 418 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 B3GNT3Q9Y2A9 372 aa16.04■□□□□ 0.16
HMGA1-202ENST00000347617 PDCD11Q14690 1871 aaKnown RBP16.04■□□□□ 0.16
HMGA1-202ENST00000347617 MAGEB16A2A368 324 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TCAF2A6NFQ2 919 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 NPHS1O60500 1241 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 ZNF623O75123 536 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 E2F6O75461 281 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 SERPINB7O75635 380 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TFEBP19484 476 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 MPSTP25325 297 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 DCKP27707 260 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 GRIA1P42261 906 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 GLUD2P49448 558 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 NME5P56597 212 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 SLC6A3Q01959 620 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 GSTM4Q03013 218 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 MOGQ16653 247 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TWF2Q6IBS0 349 aaKnown RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 NIPAL1Q6NVV3 410 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 PSTKQ8IV42 348 aaKnown RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.03■□□□□ 0.162e-8■■■■■ 27.2
HMGA1-202ENST00000347617 SLAIN1Q8ND83 568 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 PNPT1Q8TCS8 783 aaKnown RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 RAET1EQ8TD07 263 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 USP13Q92995 863 aaPredicted RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TMIGD2Q96BF3 282 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 C12orf43Q96C57 262 aaKnown RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 MAELQ96JY0 434 aaKnown RBP16.03■□□□□ 0.16
HMGA1-202ENST00000347617 AGAP3Q96P47 875 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TCF12Q99081 682 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TUBA1CQ9BQE3 449 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 TRIM15Q9C019 465 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 CD320Q9NPF0 282 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 SLC38A7Q9NVC3 462 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 GPATCH2LQ9NWQ4 482 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 SAGE1Q9NXZ1 904 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 COQ6Q9Y2Z9 468 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 HES2Q9Y543 173 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 FADS3Q9Y5Q0 445 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 AP3B1O00203 1094 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 PIGNO95427 931 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 AKAP5P24588 427 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 RAP1GAPP47736 663 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 CD151P48509 253 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 NDST1P52848 882 aa16.03■□□□□ 0.16
HMGA1-202ENST00000347617 OXCT1P55809 520 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms