RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 EFR3AQ14156 821 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 GRB14Q14449 540 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 FNDC11Q9BVV2 318 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 DNAJC18Q9H819 358 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SCAF8Q9UPN6 1271 aaKnown RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 A0A0B4J269 797 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 METTL21EPA6NDL7 271 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 MTA2O94776 668 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 GCLCP48506 637 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ARFIP1P53367 373 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CDH4P55283 916 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CBX3Q13185 183 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TUBA3CQ13748 450 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SEZ6Q53EL9 994 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 EGFLAMQ63HQ2 1017 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 LRRC20Q8TCA0 184 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SLC9A6Q92581 669 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 RTKNQ9BST9 563 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 UMODL1Q5DID0 1318 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SLC25A12O75746 678 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ATP5F1P24539 256 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 EPHB3P54753 998 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 LCN1P1Q5VSP4 162 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 LIPMQ5VYY2 423 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 RETSATQ6NUM9 610 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CES3Q6UWW8 571 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 MSL3Q8N5Y2 521 aaKnown RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 FAIM2Q9BWQ8 316 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SLC39A8Q9C0K1 460 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 PNPLA8Q9NP80 782 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SERPINB7O75635 380 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TCEA2Q15560 299 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 GPAT3Q53EU6 434 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TRIM40Q6P9F5 258 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TUBA3EQ6PEY2 450 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 HHIPL2Q6UWX4 724 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 HM13Q8TCT9 377 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ITCHQ96J02 903 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CEP41Q9BYV8 373 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CIDEBQ9UHD4 219 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 PCYOX1Q9UHG3 505 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 GRIP1Q9Y3R0 1128 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 PCDH8O95206 1070 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ICAM1P05362 532 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CKBP12277 381 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ITIH1P19827 911 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 PYHIN1Q6K0P9 492 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 MREGQ8N565 214 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ATL1Q8WXF7 558 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ZC3H10Q96K80 434 aaKnown RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ERMAPQ96PL5 475 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ETNK2Q9NVF9 386 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 STOX2Q9P2F5 926 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TSPAN16Q9UKR8 245 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SPTLC1O15269 473 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 NFE2Q16621 373 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 RASSF5Q8WWW0 418 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 C11orf24Q96F05 449 aaPredicted RBP13.98□□□□□ -0.17
CSPG4-201ENST00000308508 TRPV5Q9NQA5 729 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 RAP2CQ9Y3L5 183 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CLUHO75153 1309 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF12P17014 697 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PSMA1P25786 263 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 TUBP50607 506 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 TBX4P57082 545 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 MSANTD1Q6ZTZ1 278 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ITIH5Q86UX2 942 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CELF6Q96J87 481 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 MAGEL2Q9UJ55 1249 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 HOXA2O43364 376 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 TRMUO75648 421 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 MICAL2O94851 1124 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 IFNGP01579 166 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ANXA5P08758 320 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CCNYL3P0C7X3 344 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 KCNT2Q6UVM3 1135 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 TMPRSS11AQ6ZMR5 421 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 UNC13AQ9UPW8 1703 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 FAM172BPA6NC97 362 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 NTRK1P04629 796 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 TRIM28Q13263 835 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ACOX1Q15067 660 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PQLC1Q8N2U9 271 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ELP3Q9H9T3 547 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 ZFYVE28Q9HCC9 887 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GPRC5CQ9NQ84 441 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PPIEQ9UNP9 301 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 RBMX2Q9Y388 322 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CDC42BPAQ5VT25 1732 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 BBIP1A8MTZ0 92 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PIWIL4Q7Z3Z4 852 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 DNAJC1Q96KC8 554 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 PIH1D1Q9NWS0 290 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 GNB5O14775 395 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 IGSF6O95976 241 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SLC6A2P23975 617 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 POU5F1Q01860 360 aaKnown RBP13.97□□□□□ -0.17
CSPG4-201ENST00000308508 SGCGQ13326 291 aa13.97□□□□□ -0.17
CSPG4-201ENST00000308508 CTXN3Q4LDR2 81 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms