RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 TBC1D3HP0C7X1 549 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 PAX3P23760 479 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 FAM187BQ17R55 369 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 ARMCX4Q5H9R4 360 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 TBC1D3GQ6DHY5 549 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 TBC1D3CQ6IPX1 549 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 HIST3H2AQ7L7L0 130 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 TBC1D3Q8IZP1 549 aaPredicted RBP17.44■□□□□ 0.38
SHANK1-201ENST00000293441 HIST1H2ACQ93077 130 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 TRIT1Q9H3H1 467 aaKnown RBP17.44■□□□□ 0.38
SHANK1-201ENST00000293441 ZFP14Q9HCL3 533 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 RABGEF1Q9UJ41 708 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 OR6C75A6NL08 312 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 OR4Q2P0C623 313 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 MYL12AP19105 171 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 CLCN5P51795 746 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 ITGB3BPQ13352 177 aaPredicted RBP17.44■□□□□ 0.38
SHANK1-201ENST00000293441 INAQ16352 499 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 LGMNQ99538 433 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 SERHL2Q9H4I8 314 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 SERHLQ9NQF3 203 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 ZNF541Q9H0D2 1346 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 COL1A2P08123 1366 aa17.44■□□□□ 0.38
SHANK1-201ENST00000293441 PDE2AO00408 941 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ELFN1P0C7U0 828 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ALADP13716 330 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 H2AFXP16104 143 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 OTOP2Q7RTS6 562 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SH3RF1Q7Z6J0 888 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 PARGQ86W56 976 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 OR6Y1Q8NGX8 325 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 GAS2L1Q99501 681 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SIKE1Q9BRV8 207 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ATAD3AQ9NVI7 634 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 KLHL3Q9UH77 587 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 TMCO1Q9UM00 188 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 PEX11AO75192 247 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SPATA31C1P0DKV0 1188 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 RPL22P35268 128 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 MATKP42679 507 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 GLUD2P49448 558 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 METTL3Q86U44 580 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 GDPD5Q8WTR4 605 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 GPR20Q99678 358 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ZNF510Q9Y2H8 683 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 H0Y858 1186 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 H0YC42 278 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SLC25A14O95258 325 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 NUP62P37198 522 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 COX10Q12887 443 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ECM1Q16610 540 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 DUSP28Q4G0W2 176 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 MIIPQ5JXC2 388 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SPATA6LQ8N4H0 392 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 APOL4Q9BPW4 351 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SEMA6AQ9H2E6 1030 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 RPL7AP62424 266 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 TSNQ15631 228 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 FAIM2Q9BWQ8 316 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SLC28A3Q9HAS3 691 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 PLK2Q9NYY3 685 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 KIAA1522Q9P206 1035 aaPredicted RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 MSI1O43347 362 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 NBNO60934 754 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ERCC2P18074 760 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 LBPP18428 481 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 PKNOX1P55347 436 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 CDK16Q00536 496 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 RGS1Q08116 209 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 FBXO30Q8TB52 745 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ATXN2LQ8WWM7 1075 aaKnown RBP17.43■□□□□ 0.38
SHANK1-201ENST00000293441 ZNF670Q9BS34 389 aa17.43■□□□□ 0.38
SHANK1-201ENST00000293441 SELPP16109 830 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 TFEBP19484 476 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 LPOP22079 712 aaPredicted RBP17.42■□□□□ 0.38
SHANK1-201ENST00000293441 HSDL1Q3SXM5 330 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 BTBD9Q96Q07 612 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 MYLK2Q9H1R3 596 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 BTRCQ9Y297 605 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 OR10H1Q9Y4A9 318 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 ARIH1Q9Y4X5 557 aaPredicted RBP17.42■□□□□ 0.38
SHANK1-201ENST00000293441 LYVE1Q9Y5Y7 322 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 TREHO43280 583 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 PAGE1O75459 146 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 SLC35G4P0C7Q5 338 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 ADRM1Q16186 407 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 KRT77Q7Z794 578 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 PHF13Q86YI8 300 aaPredicted RBP17.42■□□□□ 0.38
SHANK1-201ENST00000293441 LRRC52Q8N7C0 313 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 FCRL2Q96LA5 508 aaPredicted RBP17.42■□□□□ 0.38
SHANK1-201ENST00000293441 PCDHB9Q9Y5E1 797 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 ERBB2P04626 1255 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 FAM110CQ1W6H9 321 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 SCIMPQ6UWF3 145 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 MC4RP32245 332 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 HYIQ5T013 277 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 CREG2Q8IUH2 290 aa17.42■□□□□ 0.38
SHANK1-201ENST00000293441 PCDH20Q8N6Y1 951 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms