RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 C16orf89Q6UX73 402 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 RINLQ6ZS11 566 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 TMC7Q7Z402 723 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 RTL3Q8N8U3 475 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 PTCD2Q8WV60 388 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 VTI1BQ9UEU0 232 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 FBXO5Q9UKT4 447 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 HOXA2O43364 376 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 DCXO43602 365 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 PSMG1O95456 288 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 TOP3BO95985 862 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 ALDOAP04075 364 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 AFF1P51825 1210 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 SP3Q02447 781 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 CSHL1Q14406 222 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 GRM3Q14832 879 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 WLSQ5T9L3 541 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 TEDDM1Q5T9Z0 273 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 DRAXINQ8NBI3 349 aaPredicted RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 C3orf58Q8NDZ4 430 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 TRIB2Q92519 343 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 FTHL17Q9BXU8 183 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 PAIP1Q9H074 479 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.46■□□□□ 0.23
CTCF-201ENST00000264010 EPS15L1Q9UBC2 864 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 GJD2Q9UKL4 321 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 FNDC3AQ9Y2H6 1198 aaKnown RBP16.46■□□□□ 0.23
CTCF-201ENST00000264010 LOC285556D6RIA3 1793 aa16.46■□□□□ 0.23
CTCF-201ENST00000264010 SMNDC1O75940 238 aaKnown RBP eCLIP16.46■□□□□ 0.22
CTCF-201ENST00000264010 PIGNO95427 931 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 RBP1P09455 135 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 SLC11A2P49281 568 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 RAB10P61026 200 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 PLEKHG4Q58EX7 1191 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 KIAA0319Q5VV43 1072 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 MRNIPQ6NTE8 343 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 BLOC1S5Q8TDH9 187 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 KCTD4Q8WVF5 259 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 ZBED2Q9BTP6 218 aa16.46■□□□□ 0.22
CTCF-201ENST00000264010 UBA6A0AVT1 1052 aaPredicted RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 MEI4A8MW99 385 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 FESP07332 822 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 OR1E1P30953 314 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 MTA1Q13330 715 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 RAP1GAP2Q684P5 730 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 PTAR1Q7Z6K3 402 aaPredicted RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 GALNT15Q8N3T1 639 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 NPWQ8N729 165 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 UCMAQ8WVF2 138 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 SEPT8Q92599 483 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 SLC7A6OSQ96CW6 309 aaPredicted RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 PHF12Q96QT6 1004 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 SMOC2Q9H3U7 446 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GPAMQ9HCL2 828 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GIMAP4Q9NUV9 329 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 ZNFX1Q9P2E3 1918 aaKnown RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 A0A087X1B8 175 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 OR6C75A6NL08 312 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GOLGA8CPA6NN73 597 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 CYBAP13498 195 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 CD86P42081 329 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 RPL14P50914 215 aaKnown RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 LIPMQ5VYY2 423 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 ABHD8Q96I13 439 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 FAR2Q96K12 515 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 CDH19Q9H159 772 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 ATXN10Q9UBB4 475 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GABRQQ9UN88 632 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 ATP11BQ9Y2G3 1177 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 SCN1AP35498 2009 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 TRAFD1O14545 582 aaPredicted RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 FKBP6O75344 327 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 COL6A2P12110 1019 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GFAPP14136 432 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 SERPINB5P36952 375 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 MAPRE2Q15555 327 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 RAB41Q5JT25 222 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 CST9Q5W186 159 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 RBM15BQ8NDT2 890 aaKnown RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 SH3TC2Q8TF17 1288 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 FUBP3Q96I24 572 aaKnown RBP eCLIP16.45■□□□□ 0.22
CTCF-201ENST00000264010 ZNF570Q96NI8 536 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 CAAP1Q9H8G2 361 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 ZNF358Q9NW07 568 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 DNAJC28Q9NX36 388 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 GMIPQ9P107 970 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 RAP2CQ9Y3L5 183 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 TCAF1Q9Y4C2 921 aa16.45■□□□□ 0.22
CTCF-201ENST00000264010 MYO18AQ92614 2054 aaKnown RBP16.45■□□□□ 0.22
CTCF-201ENST00000264010 RHOQP17081 205 aa16.44■□□□□ 0.22
CTCF-201ENST00000264010 SP100P23497 879 aaPredicted RBP16.44■□□□□ 0.22
CTCF-201ENST00000264010 GRIA4P48058 902 aa16.44■□□□□ 0.22
CTCF-201ENST00000264010 PM20D1Q6GTS8 502 aa16.44■□□□□ 0.22
CTCF-201ENST00000264010 NET1Q7Z628 596 aaPredicted RBP16.44■□□□□ 0.22
CTCF-201ENST00000264010 FCRL3Q96P31 734 aaPredicted RBP16.44■□□□□ 0.22
CTCF-201ENST00000264010 UNKQ9C0B0 810 aaKnown RBP16.44■□□□□ 0.22
CTCF-201ENST00000264010 WDR90Q96KV7 1748 aa16.44■□□□□ 0.22
CTCF-201ENST00000264010 PABPN1LA6NDY0 278 aaKnown RBP16.44■□□□□ 0.22
CTCF-201ENST00000264010 KRT36O76013 467 aa16.44■□□□□ 0.22
CTCF-201ENST00000264010 CYP11A1P05108 521 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms