RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RPL9P32969 192 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 XIAPP98170 497 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 BNIP1Q12981 228 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 EIF2B5Q13144 721 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 TAF5Q15542 800 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 TPSAB1Q15661 275 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SLC25A52Q3SY17 297 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 TIMM50Q3ZCQ8 353 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 INO80DQ53TQ3 878 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 MON1BQ7L1V2 547 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CMC1Q7Z7K0 106 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CROCCP3Q8IVE0 287 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SFRP1Q8N474 314 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 C12orf50Q8NA57 414 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 DNAJB14Q8TBM8 379 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 NDNQ99608 321 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SLC4A5Q9BY07 1137 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 DUSP16Q9BY84 665 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 C6orf62Q9GZU0 229 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 VPS45Q9NRW7 570 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 RCOR3Q9P2K3 495 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 DPP7Q9UHL4 492 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CORO1CQ9ULV4 474 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 MAPRE3Q9UPY8 281 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 PCDHB12Q9Y5F1 795 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 H3BN98 237 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 AGPSO00116 658 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 LYPLA1O75608 230 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 C4BPAP04003 597 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 CYP2A6P11509 494 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 GSSP48637 474 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 HADHBP55084 474 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 ATP6V0D1P61421 351 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 BEX3Q00994 111 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 TOP3AQ13472 1001 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 SLC1A5Q15758 541 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 PABPC1LQ4VXU2 614 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 INTS11Q5TA45 600 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 ISLR2Q6UXK2 745 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 MTSS1LQ765P7 747 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CDK20Q8IZL9 346 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 TSEN34Q9BSV6 310 aaKnown RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 NMUR2Q9GZQ4 415 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 ARL8BQ9NVJ2 186 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SNAP91O60641 907 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 ULK1O75385 1050 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CKBP12277 381 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CRHR1P34998 444 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 HPCAL1P37235 193 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CDKN2BP42772 138 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 MAPK8P45983 427 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CENPAP49450 140 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 KCTD19Q17RG1 926 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 ATAD3BQ5T9A4 648 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 RSBN1Q5VWQ0 802 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 AFTPHQ6ULP2 937 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 ZNF605Q86T29 641 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 ECHDC2Q86YB7 292 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 DPP10Q8N608 796 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CPT1BQ92523 772 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 UROC1Q96N76 676 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 TSPAN18Q96SJ8 248 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SENP6Q9GZR1 1112 aaPredicted RBP10.85□□□□□ -0.67
CD44-201ENST00000263398 CDH19Q9H159 772 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 ASB8Q9H765 288 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 COMMD3-BMI1R4GMX3 469 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 SLIT3O75094 1523 aa10.85□□□□□ -0.67
CD44-201ENST00000263398 CLTBP09497 229 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ADRA1BP35368 520 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 GRIK3Q13003 919 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 USP4Q13107 963 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 TRAF3Q13114 568 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ZCCHC8Q6NZY4 707 aaKnown RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 ADAMTSL2Q86TH1 951 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 TOP6BLQ8N6T0 577 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 NKX2-3Q8TAU0 364 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 TLCD1Q96CP7 247 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 C1orf50Q9BV19 199 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 DGCR6LQ9BY27 220 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 CLIC5Q9NZA1 410 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 VPS51Q9UID3 782 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 DERAQ9Y315 318 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 VWA7Q9Y334 891 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ATP6AP2A0A1C7CYW4 349 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 AZIN1O14977 448 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 AHCYL1O43865 530 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ATP6AP2O75787 350 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 FARP2O94887 1054 aaPredicted RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 TGDSO95455 350 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 EIF2S1P05198 315 aaKnown RBP10.84□□□□□ -0.67
CD44-201ENST00000263398 SMIM10L2AP0DMW4 78 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 SMIM10L2BP0DMW5 78 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 COX7A2P14406 83 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 WNT3AP56704 352 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 PLD1Q13393 1074 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 NPY5RQ15761 445 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 FGD3Q5JSP0 725 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 BRMS1LQ5PSV4 323 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 ABRAXAS1Q6UWZ7 409 aa10.84□□□□□ -0.67
CD44-201ENST00000263398 USP45Q70EL2 814 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms