RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GEMP55040 296 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 MESP2Q0VG99 397 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 CBLBQ13191 982 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 PITRM1Q5JRX3 1037 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 CES5AQ6NT32 575 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 UNC5AQ6ZN44 842 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 C12orf40Q86WS4 652 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 CCDC117Q8IWD4 279 aaPredicted RBP20.39■□□□□ 0.85
CLN3-250ENST00000636839 DCAF4L2Q8NA75 395 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 ATP11CQ8NB49 1132 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 TTC8Q8TAM2 541 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 FBF1Q8TES7 1133 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 TTC25Q96NG3 672 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 MGME1Q9BQP7 344 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 RPP25Q9BUL9 199 aaKnown RBP20.39■□□□□ 0.85
CLN3-250ENST00000636839 POMKQ9H5K3 350 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 KIF9Q9HAQ2 790 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 LMCD1Q9NZU5 365 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 RABGEF1Q9UJ41 708 aa20.39■□□□□ 0.85
CLN3-250ENST00000636839 NUP210Q8TEM1 1887 aaPredicted RBP20.38■□□□□ 0.85
CLN3-250ENST00000636839 ATP9BO43861 1147 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 BMP1P13497 986 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 ATXN7L2Q5T6C5 722 aaPredicted RBP20.38■□□□□ 0.85
CLN3-250ENST00000636839 VITQ6UXI7 678 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 RANBP10Q6VN20 620 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 TADA1Q96BN2 335 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 TMBIM4Q9HC24 238 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 DOCK8Q8NF50 2099 aa20.38■□□□□ 0.85
CLN3-250ENST00000636839 CCDC78A2IDD5 438 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 GCAP28676 217 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 GBP2P32456 591 aaPredicted RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 PPARDQ03181 441 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 GRM2Q14416 872 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 TMEM215Q68D42 235 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 TRMT10BQ6PF06 316 aaKnown RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 PARM1Q6UWI2 310 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 SH2D3CQ8N5H7 860 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 OTUB2Q96DC9 234 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 STAMBPL1Q96FJ0 436 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 MSLNLQ96KJ4 702 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 XPO6Q96QU8 1125 aaKnown RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 KXD1Q9BQD3 176 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 C2orf49Q9BVC5 232 aaPredicted RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 FSD1LQ9BXM9 530 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 IL1RAPL1Q9NZN1 696 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 BCCIPQ9P287 314 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-250ENST00000636839 LHX3Q9UBR4 397 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 A0A087WUV0 522 aaPredicted RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 TCRBV9S1A1TA0A576 114 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 SLC9A3R1O14745 358 aaPredicted RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 ABHD2P08910 425 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 NAIF1Q69YI7 327 aaPredicted RBP20.37■□□□□ 0.85
CLN3-250ENST00000636839 NAPEPLDQ6IQ20 393 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 MICALCLQ6ZW33 695 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 SORCS1Q8WY21 1168 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 ATP2A3Q93084 1043 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 TRPV4Q9HBA0 871 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 ZFP14Q9HCL3 533 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 OGFRQ9NZT2 677 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 GGA2Q9UJY4 613 aa20.37■□□□□ 0.85
CLN3-250ENST00000636839 H3BQ06 376 aaPredicted RBP20.36■□□□□ 0.85
CLN3-250ENST00000636839 RNF40O75150 1001 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 CR2P20023 1033 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 GYS2P54840 703 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 EIF3BP55884 814 aaKnown RBP20.36■□□□□ 0.85
CLN3-250ENST00000636839 MPP3Q13368 585 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 RFTN1Q14699 578 aaPredicted RBP20.36■□□□□ 0.85
CLN3-250ENST00000636839 ADIPOR2Q86V24 386 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 OR6K2Q8NGY2 324 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 FGF14Q92915 247 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 ZNF778Q96MU6 729 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 FCRL3Q96P31 734 aaPredicted RBP20.36■□□□□ 0.85
CLN3-250ENST00000636839 FAM83CQ9BQN1 747 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 TM6SF2Q9BZW4 377 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 CHRAC1Q9NRG0 131 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 MARK1Q9P0L2 795 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 GOLGA6CA6NDK9 693 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 POC1B-GALNT4F8VUJ3 575 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 RASGRF2O14827 1237 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 INSIG1O15503 277 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 OPA1O60313 960 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 MYZAPP0CAP1 466 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 GOLGA6DP0CG33 693 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 ADH5P11766 374 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 PABPC1P11940 636 aaKnown RBP20.36■□□□□ 0.85
CLN3-250ENST00000636839 LAMP2P13473 410 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 SLC6A11P48066 632 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 PLK1P53350 603 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 CDH17Q12864 832 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 POU6F1Q14863 301 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 GEN1Q17RS7 908 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 HSP90B2PQ58FF3 399 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 ALG1LQ6GMV1 187 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 CYP4X1Q8N118 509 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 LRRC39Q96DD0 335 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 SMIM14Q96QK8 99 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 TNKS2Q9H2K2 1166 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 HPS4Q9NQG7 708 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 GOLGA6AQ9NYA3 693 aa20.36■□□□□ 0.85
CLN3-250ENST00000636839 CXorf49A8MYA2 514 aaPredicted RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms