RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 APOLD1Q96LR9 279 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 C11orf70Q9BRQ4 267 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 MAGEB5Q9BZ81 275 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 GPR27Q9NS67 375 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 NLGN3Q9NZ94 848 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 DNAI1Q9UI46 699 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 BPTFQ12830 3046 aa13.39□□□□□ -0.27
RPS28-204ENST00000602140 IGLON5A6NGN9 336 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 C2CD4BA6NLJ0 364 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 C16orf96A6NNT2 1141 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 K7ESM1 405 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 NEMP1O14524 444 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 SCAMP1O15126 338 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 OPA1O60313 960 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 NEBLO76041 1014 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 RHOQP17081 205 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 ABL2P42684 1182 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 MAPKAPK2P49137 400 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 GEMIN4P57678 1058 aaKnown RBP13.38□□□□□ -0.27
RPS28-204ENST00000602140 SGCGQ13326 291 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 CT47A1Q5JQC4 288 aaPredicted RBP13.38□□□□□ -0.27
RPS28-204ENST00000602140 LEKR1Q6ZMV7 388 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 STRADAQ7RTN6 431 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 PLPP6Q8IY26 295 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 FGF11Q92914 225 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 LENG8Q96PV6 779 aaPredicted RBP13.38□□□□□ -0.27
RPS28-204ENST00000602140 DUSP23Q9BVJ7 150 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 C1QTNF2Q9BXJ5 285 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 OSBPL2Q9H1P3 480 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 MAGEH1Q9H213 219 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 NLRC4Q9NPP4 1024 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 FAM207AQ9NSI2 230 aaPredicted RBP13.38□□□□□ -0.27
RPS28-204ENST00000602140 TMEM248Q9NWD8 314 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 IPO11Q9UI26 975 aaKnown RBP13.38□□□□□ -0.27
RPS28-204ENST00000602140 GGT7Q9UJ14 662 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 HPCAL4Q9UM19 191 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 ITM2BQ9Y287 266 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 PCDHB1Q9Y5F3 818 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 RAI2Q9Y5P3 530 aa13.38□□□□□ -0.27
RPS28-204ENST00000602140 LY6G6EA0A0G2JKS1 128 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 SPTY2D1-AS1A0A0U1RR47 76 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 CXorf51AA0A1B0GTR3 108 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 KRIT1O00522 736 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 FPGTO14772 594 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 TSPAN6O43657 245 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 RAMP2O60895 175 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 LRIG2O94898 1065 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 CSF2P04141 144 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 UGT2B4P06133 528 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 PLEKP08567 350 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 NME1P15531 152 aaKnown RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 ACTN2P35609 894 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 SOX5P35711 763 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 PTPN9P43378 593 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 RABIFP47224 123 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 DUSP3P51452 185 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 HDAC4P56524 1084 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 JAM2P57087 298 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 SNRPD1P62314 119 aaKnown RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 PDE1CQ14123 709 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 POLD3Q15054 466 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 KRT31Q15323 416 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 ZNF805Q5CZA5 627 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 CDCP2Q5VXM1 449 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 TRIM72Q6ZMU5 477 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 ZSCAN30Q86W11 494 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 PARGQ86W56 976 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 CCDC185Q8N715 623 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 FAM181AQ8N9Y4 354 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 ZNF548Q8NEK5 533 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 OR2AP1Q8NGE2 309 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 ENOX1Q8TC92 643 aaKnown RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 FAM172AQ8WUF8 416 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 RAB7BQ96AH8 199 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 TBC1D31Q96DN5 1066 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 UBL7Q96S82 380 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 KLF6Q99612 283 aaPredicted RBP13.37□□□□□ -0.27
RPS28-204ENST00000602140 PRORYQ9H606 182 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 RETREG1Q9H6L5 497 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 KLF15Q9UIH9 416 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 NEU3Q9UQ49 428 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 U3KQA8 63 aa13.37□□□□□ -0.27
RPS28-204ENST00000602140 TDRD6O60522 2096 aaKnown RBP13.36□□□□□ -0.27
RPS28-204ENST00000602140 TRPM6Q9BX84 2022 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 H3BM21 787 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 EPHB6O15197 1021 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 POP4O95707 220 aaKnown RBP13.36□□□□□ -0.27
RPS28-204ENST00000602140 GSRP00390 522 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 GP1BAP07359 652 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 TPM2P07951 284 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 KRT3P12035 628 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 UNGP13051 313 aaPredicted RBP13.36□□□□□ -0.27
RPS28-204ENST00000602140 RFC1P35251 1148 aaPredicted RBP13.36□□□□□ -0.27
RPS28-204ENST00000602140 CCDC173Q0VFZ6 552 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 PTP4A2Q12974 167 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 MYLK3Q32MK0 819 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 TBC1D25Q3MII6 688 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 TPRG1LQ5T0D9 272 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 FKBP15Q5T1M5 1219 aa13.36□□□□□ -0.27
RPS28-204ENST00000602140 ATXN7L2Q5T6C5 722 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms