RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 EMCNQ9ULC0 261 aa17.27■□□□□ 0.35
SHKBP1-216ENST00000598201 MTO1Q9Y2Z2 717 aaKnown RBP17.27■□□□□ 0.35
SHKBP1-216ENST00000598201 TCAF1Q9Y4C2 921 aa17.27■□□□□ 0.35
SHKBP1-216ENST00000598201 INSL5Q9Y5Q6 135 aa17.27■□□□□ 0.35
SHKBP1-216ENST00000598201 ACTL7AQ9Y615 435 aa17.27■□□□□ 0.35
SHKBP1-216ENST00000598201 E2F8A0AVK6 867 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 CA3P07451 260 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 LBRQ14739 615 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 VEPH1Q14D04 833 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 RAB30Q15771 203 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 RNF43Q68DV7 783 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 POTEHQ6S545 545 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 TCEAL8Q8IYN2 117 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 NSMCE1Q8WV22 266 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 SLC22A12Q96S37 553 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 CYP2S1Q96SQ9 504 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 PDFQ9HBH1 243 aa17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 MRPL17Q9NRX2 175 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 AGO1Q9UL18 857 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 YBX2Q9Y2T7 364 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-216ENST00000598201 HGSO14964 777 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 LILRB3O75022 631 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 GSRP00390 522 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 NEFHP12036 1026 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 HOXD9P28356 352 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 TYK2P29597 1187 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ELF1P32519 619 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SPRP35270 261 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ARCN1P48444 511 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 IRX4P78413 519 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SMAD3P84022 425 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ACTN3Q08043 901 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 PDPK2PQ6A1A2 396 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 CCDC117Q8IWD4 279 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 FITM2Q8N6M3 262 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 PPHLN1Q8NEY8 458 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ISL2Q96A47 359 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 TADA1Q96BN2 335 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 TSSK1BQ9BXA7 367 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 CAB39LQ9H9S4 337 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ARNT2Q9HBZ2 717 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SNX15Q9NRS6 342 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SMPD4Q9NXE4 827 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 LINC01553A4QN01 128 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SCAMP3O14828 347 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 UBOX5O94941 541 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 FSBPO95073 299 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 VAPBO95292 243 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 PRKCGP05129 697 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 LINC00271P0C7V0 271 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 MAGEA12P43365 314 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SCTRP47872 440 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 CDH4P55283 916 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 GNA12Q03113 381 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 MSLNQ13421 630 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 CNGA3Q16281 694 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 N4BP2L1Q5TBK1 243 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 C10orf82Q8WW14 230 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ZFRQ96KR1 1074 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 NPHS2Q9NP85 383 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 VPS45Q9NRW7 570 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 TREX1Q9NSU2 369 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 SIRPGQ9P1W8 387 aa17.25■□□□□ 0.35
SHKBP1-216ENST00000598201 ANAPC1Q9H1A4 1944 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 CCDC195A0A1B0GUA6 201 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 VGLL3A8MV65 326 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 TSPAN3O60637 253 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 FGF18O76093 207 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 GLDCP23378 1020 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 GABRB3P28472 473 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 MAGEA9P43362 315 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 SEPT6Q14141 434 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 DLG2Q15700 870 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 TMCO4Q5TGY1 634 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 CLP1Q92989 425 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 MRM3Q9HC36 420 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 UXTQ9UBK9 157 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 GBF1Q92538 1859 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 BPTFQ12830 3046 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 ARHGEF15O94989 841 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 F11P03951 625 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 BPGMP07738 259 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 EPHB3P54753 998 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 CSE1LP55060 971 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 RABGAP1LQ5R372 815 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 KYAT3Q6YP21 454 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 DENND6AQ8IWF6 608 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 RFWD2Q8NHY2 731 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 CHD5Q8TDI0 1954 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 PTCD2Q8WV60 388 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 VPS39Q96JC1 886 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 SEMA3CQ99985 751 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 PLCD4Q9BRC7 762 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 KIAA1671Q9BY89 1806 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 MAGEH1Q9H213 219 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 NKX2-4Q9H2Z4 354 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 IL21Q9HBE4 155 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 ZNF358Q9NW07 568 aa17.24■□□□□ 0.35
SHKBP1-216ENST00000598201 KLF11O14901 512 aa17.23■□□□□ 0.35
SHKBP1-216ENST00000598201 GLRA3O75311 464 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms