RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ANO10Q9NW15 660 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 DNAJC28Q9NX36 388 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 LIMA1Q9UHB6 759 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 NOCTQ9UK39 431 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 FADS3Q9Y5Q0 445 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 WASF2Q9Y6W5 498 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ASH1LQ9NR48 2969 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 POM121BA6NF01 834 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 LRRC10BA6NIK2 292 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 COL6A6A6NMZ7 2263 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 TPP1O14773 563 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ZMPSTE24O75844 475 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 PAK4O96013 591 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ADRB3P13945 408 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 CHRNB2P17787 502 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 RABIFP47224 123 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 GABRB2P47870 512 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SULT1E1P49888 294 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SERPINH1P50454 418 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 JAM2P57087 298 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 RNASE9P60153 205 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 POLR2FP61218 127 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 FGL2Q14314 439 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 STX1AQ16623 288 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ISXQ2M1V0 245 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SLC25A52Q3SY17 297 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 CARD16Q5EG05 197 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ARTNQ5T4W7 220 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 CCDC183Q5T5S1 534 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SASS6Q6UVJ0 657 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 PTAR1Q7Z6K3 402 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 TFAP2DQ7Z6R9 452 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 PARGQ86W56 976 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 XYLT1Q86Y38 959 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 CFAP46Q8IYW2 2715 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 TMEM35BQ8NCS4 154 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF548Q8NEK5 533 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 TPCN2Q8NHX9 752 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 IFI44Q8TCB0 444 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 GRIN3AQ8TCU5 1115 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 MAPK15Q8TD08 544 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SLC20A1Q8WUM9 679 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SNRNP27Q8WVK2 155 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 KCNE4Q8WWG9 221 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ASB12Q8WXK4 309 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 NAF1Q96HR8 494 aaKnown RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 HAPLN3Q96S86 360 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 C1QTNF2Q9BXJ5 285 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ASCL3Q9NQ33 180 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 THSD1Q9NS62 852 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 FAM207AQ9NSI2 230 aaPredicted RBP12.75□□□□□ -0.37
TRIM28-212ENST00000597995 MPP6Q9NZW5 540 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF212Q9UDV6 495 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SALL4Q9UJQ4 1053 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SSUH2Q9Y2M2 353 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 SNX10Q9Y5X0 201 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ATMQ13315 3056 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF462Q96JM2 2506 aa12.75□□□□□ -0.37
TRIM28-212ENST00000597995 DOCK4Q8N1I0 1966 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 EME2A4GXA9 379 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 GOLGA6L22H0YM25 854 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 TSPAN6O43657 245 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 NEBLO76041 1014 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 GFPT2O94808 682 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 MBD3O95983 291 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 MYF5P13349 255 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 NOMO3P69849 1222 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 FMO1Q01740 532 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 MYL5Q02045 173 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 TYRO3Q06418 890 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 SGCGQ13326 291 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 MAPK8IP2Q13387 824 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 SYCP1Q15431 976 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 TAF1BQ53T94 588 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF542PQ5EBM4 170 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 BNIPLQ7Z465 357 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 DENND6BQ8NEG7 585 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 OR7D4Q8NG98 312 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 CPA5Q8WXQ8 436 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 RAB7BQ96AH8 199 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 ISG20Q96AZ6 181 aaKnown RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 C18orf8Q96DM3 657 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 TBCBQ99426 244 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 KLF6Q99612 283 aaPredicted RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 SPON2Q9BUD6 331 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 ZYG11BQ9C0D3 744 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 OSBPL2Q9H1P3 480 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 CAAP1Q9H8G2 361 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 ATP13A1Q9HD20 1204 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 NLRC4Q9NPP4 1024 aa12.74□□□□□ -0.37
TRIM28-212ENST00000597995 IPO11Q9UI26 975 aaKnown RBP12.74□□□□□ -0.37
TRIM28-212ENST00000597995 LGALS16A8MUM7 142 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 FPGTO14772 594 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 RAD51BO15315 384 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 KLK10O43240 276 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 AQP9O43315 295 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ENDOD1O94919 500 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 CYP1A1P04798 512 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-212ENST00000597995 ATP1A3P13637 1013 aa12.73□□□□□ -0.37
TRIM28-212ENST00000597995 SOX5P35711 763 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms