RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 RFTN1Q14699 578 aaPredicted RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 PAFAH1B3Q15102 231 aaKnown RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 AASDHQ4L235 1098 aaPredicted RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 ATXN7L2Q5T6C5 722 aaPredicted RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 NCBP2-AS2Q69YL0 99 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 ERN2Q76MJ5 926 aaKnown RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 VSIG1Q86XK7 387 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 OR6K2Q8NGY2 324 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 PPP1R16AQ96I34 528 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 NUSAP1Q9BXS6 441 aaKnown RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 ZDHHC6Q9H6R6 413 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 SP110Q9HB58 689 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 TPX2Q9ULW0 747 aaKnown RBP19.62■□□□□ 0.73
SS18-208ENST00000577751 ALG6Q9Y672 507 aa19.62■□□□□ 0.73
SS18-208ENST00000577751 A0A1B0GTW7 788 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 C3orf70A6NLC5 250 aaPredicted RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 BTNL10A8MVZ5 291 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 KRIT1O00522 736 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 PJA2O43164 708 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 MAFKO60675 156 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 IPO7O95373 1038 aaKnown RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 IGSF6O95976 241 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 PEX11BO96011 259 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 CD27P26842 260 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 RHOT1Q8IXI2 618 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 RYBPQ8N488 228 aaPredicted RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 PQLC3Q8N755 202 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 NETO1Q8TDF5 533 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 CALR3Q96L12 384 aaKnown RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 ZNF599Q96NL3 588 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 RNF157Q96PX1 679 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 OSBPL1AQ9BXW6 950 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 CPEB1Q9BZB8 566 aaKnown RBP19.61■□□□□ 0.73
SS18-208ENST00000577751 MIR1-1HGQ9H1L0 117 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 EBF2Q9HAK2 575 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 DYRK4Q9NR20 520 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 DLL3Q9NYJ7 618 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 HYOU1Q9Y4L1 999 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 SLCO1B1Q9Y6L6 691 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 DMXL1Q9Y485 3027 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 ADAMTS9Q9P2N4 1935 aa19.61■□□□□ 0.73
SS18-208ENST00000577751 PLXNA2O75051 1894 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3DA0A087WVF3 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3IA0A087WXS9 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3EA0A087X179 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3KA0A087X1G2 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 A0A1W2PPC4 97 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3FA6NER0 549 aaPredicted RBP19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3LB9A6J9 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 BCAT2O15382 392 aaPredicted RBP19.6■□□□□ 0.73
SS18-208ENST00000577751 LATO43561 262 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 PALMO75781 387 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 CFIP05156 583 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3HP0C7X1 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 CSNK1DP48730 415 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 VAV2P52735 878 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 RAD51Q06609 339 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 RSPO4Q2I0M5 234 aaPredicted RBP19.6■□□□□ 0.73
SS18-208ENST00000577751 ZNF805Q5CZA5 627 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3GQ6DHY5 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3CQ6IPX1 549 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 C11orf63Q6NUN7 778 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 LRRC49Q8IUZ0 686 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 TBC1D3Q8IZP1 549 aaPredicted RBP19.6■□□□□ 0.73
SS18-208ENST00000577751 ZCCHC9Q8N567 271 aaKnown RBP19.6■□□□□ 0.73
SS18-208ENST00000577751 ACRBPQ8NEB7 543 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 RMDN1Q96DB5 314 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 EDEM2Q9BV94 578 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 LACRTQ9GZZ8 138 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 PREBQ9HCU5 417 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 DUSP10Q9Y6W6 482 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 LAMA1P25391 3075 aa19.6■□□□□ 0.73
SS18-208ENST00000577751 CACNA1EQ15878 2313 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 SHROOM3Q8TF72 1996 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 LRRD1A4D1F6 860 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 GOLGA6L6A8MZA4 724 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 CDX4O14627 284 aaPredicted RBP19.59■□□□□ 0.73
SS18-208ENST00000577751 INSIG1O15503 277 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 SPOPO43791 374 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 MFSD11O43934 449 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 ADRB3P13945 408 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 ENGP17813 658 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 SDHBP21912 280 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 NEK3P51956 506 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 GSDMDP57764 484 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 NSUN2Q08J23 767 aaKnown RBP eCLIP19.59■□□□□ 0.73
SS18-208ENST00000577751 LBRQ14739 615 aaKnown RBP19.59■□□□□ 0.73
SS18-208ENST00000577751 ZFYVE27Q5T4F4 411 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 NEK5Q6P3R8 708 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 GDPD4Q6W3E5 623 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 PARS2Q7L3T8 475 aaKnown RBP19.59■□□□□ 0.73
SS18-208ENST00000577751 TRIM69Q86WT6 500 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 TSEN2Q8NCE0 465 aaKnown RBP19.59■□□□□ 0.73
SS18-208ENST00000577751 TPCN2Q8NHX9 752 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 SNX19Q92543 992 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 EXOC2Q96KP1 924 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 PSKH2Q96QS6 385 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 GOLPH3Q9H4A6 298 aa19.59■□□□□ 0.73
SS18-208ENST00000577751 DDX56Q9NY93 547 aaKnown RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms