RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CCDC74AQ96AQ1 378 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 ZSWIM1Q9BR11 485 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 FUCA2Q9BTY2 467 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 LRRC61Q9BV99 259 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 POPDC2Q9HBU9 364 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 DDIT4Q9NX09 232 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 VPS51Q9UID3 782 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 RABGEF1Q9UJ41 708 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 COQ4Q9Y3A0 265 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 OR51B4Q9Y5P0 310 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 FADS3Q9Y5Q0 445 aa7.47□□□□□ -1.21
VPS4A-203ENST00000564399 ITPR2Q14571 2701 aa7.46□□□□□ -1.21
VPS4A-203ENST00000564399 DOCK4Q8N1I0 1966 aa7.46□□□□□ -1.21
VPS4A-203ENST00000564399 A0A1W2PQM1 296 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 RNF225M0QZC1 329 aaPredicted RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 RHOBTB3O94955 611 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ADCY5O95622 1261 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 MYL1P05976 194 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CTSEP14091 401 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ITGB7P26010 798 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 L1CAMP32004 1257 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CCKBRP32239 447 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CASRP41180 1078 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CDH4P55283 916 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 POLE2P56282 527 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 MCCD1P59942 119 aaPredicted RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 PFN3P60673 137 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 PPARDQ03181 441 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 KCNAB2Q13303 367 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ELOCQ15369 112 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 EDRF1Q3B7T1 1238 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 TMEM164Q5U3C3 297 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 BORAQ6PGQ7 559 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 BEND5Q7L4P6 421 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 VPS36Q86VN1 386 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ZSCAN30Q86W11 494 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 PPM1KQ8N3J5 372 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ARL10Q8N8L6 244 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 Q8N9G6 341 aaPredicted RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 KYQ8NBH2 561 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 PCDH19Q8TAB3 1148 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 INTS4Q96HW7 963 aaKnown RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 NT5C1BQ96P26 610 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 LENG8Q96PV6 779 aaPredicted RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 PSMG3-AS1Q96PY0 264 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 MED15Q96RN5 788 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 KLF6Q99612 283 aaPredicted RBP7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CMKLR1Q99788 373 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 HEPHQ9BQS7 1158 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 C1QTNF2Q9BXJ5 285 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 CLPBQ9H078 707 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 SIK2Q9H0K1 926 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 LRRN3Q9H3W5 708 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 FOXJ2Q9P0K8 574 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 USP25Q9UHP3 1055 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 ANAPC2Q9UJX6 822 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 GPR34Q9UPC5 381 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 TBC1D30Q9Y2I9 924 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 WASF2Q9Y6W5 498 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 MED13Q9UHV7 2174 aa7.46□□□□□ -1.22
VPS4A-203ENST00000564399 A0A1B0GVL5 298 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 A0A1W2PQ27 194 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 A0A1W2PQ64 194 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 A0A1W2PQC6 194 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CLEC18AA5D8T8 446 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ENO4A6NNW6 628 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 E5RJQ4 531 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 TSPAN6O43657 245 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 AP1G1O43747 822 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CNTN5O94779 1100 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 IGLV3-25P01717 112 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CELA2BP08218 269 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ALPIP09923 528 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 PFKFB1P16118 471 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CD82P27701 267 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 EIF4A3P38919 411 aaKnown RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ETV5P41161 510 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 GPD2P43304 727 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CCR10P46092 362 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ATP1A2P50993 1020 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 BLKP51451 505 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CLCN6P51797 869 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 NME3Q13232 169 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 TAF5Q15542 800 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 ZCWPW2Q504Y3 356 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 PHF19Q5T6S3 580 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 HIST2H2BCQ6DN03 193 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CLEC18BQ6UXF7 455 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 PARS2Q7L3T8 475 aaKnown RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 RD3Q7Z3Z2 195 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CCNJLQ8IV13 435 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 HID1Q8IV36 788 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 DEFB106AQ8N104 65 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 FSTL5Q8N475 847 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 RYBPQ8N488 228 aaPredicted RBP7.45□□□□□ -1.22
VPS4A-203ENST00000564399 DCAF4L2Q8NA75 395 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 CLEC18CQ8NCF0 446 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 DENND6BQ8NEG7 585 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 OR6C4Q8NGE1 309 aa7.45□□□□□ -1.22
VPS4A-203ENST00000564399 KAT5Q92993 513 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms