RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PSKH2Q96QS6 385 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 SELENOSQ9BQE4 189 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 MGME1Q9BQP7 344 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 CAPS2Q9BXY5 557 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 UGT1A7Q9HAW7 530 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 UGT1A10Q9HAW8 530 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 UGT1A8Q9HAW9 530 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 PIDD1Q9HB75 910 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 SEPT3Q9UH03 358 aa18.3■□□□□ 0.52
COMMD4-208ENST00000563220 MRPS23Q9Y3D9 190 aaKnown RBP18.3■□□□□ 0.52
COMMD4-208ENST00000563220 A0A1W2PPM1 405 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 MAGEB16A2A368 324 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 RGRP47804 291 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ANKRD20A4Q4UJ75 823 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 FYB2Q5VWT5 728 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 RNF43Q68DV7 783 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ALG1LQ6GMV1 187 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 LINGO4Q6UY18 593 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 SLC26A11Q86WA9 606 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ARID3BQ8IVW6 561 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-208ENST00000563220 MZB1Q8WU39 189 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 MFSD3Q96ES6 412 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 NSMCE3Q96MG7 304 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 LINC00597Q9H2U6 94 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 IL1RAPL1Q9NZN1 696 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 SOX13Q9UN79 622 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 PDE4DIPQ5VU43 2346 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ZCWPW2A0A1B0GU75 182 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 FAM237BA0A1B0GVD1 139 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 INHBAP08476 426 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 KRT15P19012 456 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 MDH1P40925 334 aaKnown RBP18.29■□□□□ 0.52
COMMD4-208ENST00000563220 RFTN1Q14699 578 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ZNF77Q15935 545 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 SPANXN3Q5MJ09 141 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ELMSAN1Q6PJG2 1045 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 APCDD1Q8J025 514 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 SLC25A41Q8N5S1 370 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ZNF669Q96BR6 464 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ZNF778Q96MU6 729 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 KIFC1Q9BW19 673 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 CINPQ9BW66 212 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-208ENST00000563220 KIF9Q9HAQ2 790 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ARNT2Q9HBZ2 717 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 VPS28Q9UK41 221 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 ACTL7BQ9Y614 415 aa18.29■□□□□ 0.52
COMMD4-208ENST00000563220 USP1O94782 785 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 PAPLNO95428 1278 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 BRAFP15056 766 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 NMBRP28336 390 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 NR1H3Q13133 447 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 POU6F1Q14863 301 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 SMAD1Q15797 465 aaKnown RBP18.28■□□□□ 0.52
COMMD4-208ENST00000563220 TMEM25Q86YD3 366 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 BBS5Q8N3I7 341 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 CNOT10Q9H9A5 744 aaKnown RBP18.28■□□□□ 0.52
COMMD4-208ENST00000563220 PPANQ9NQ55 473 aaKnown RBP18.28■□□□□ 0.52
COMMD4-208ENST00000563220 SLC17A6Q9P2U8 582 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 VPS51Q9UID3 782 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 FAM169AQ9Y6X4 670 aa18.28■□□□□ 0.52
COMMD4-208ENST00000563220 LOC285095A0A1B0GVY8 99 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 ERVK-10P10266 1014 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 CHN1P15882 459 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 CR2P20023 1033 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 GNGT1P63211 74 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 LMAN2Q12907 356 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 MSLNQ13421 630 aaPredicted RBP18.27■□□□□ 0.52
COMMD4-208ENST00000563220 MPP2Q14168 576 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 PCID2Q5JVF3 399 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 RNF135Q8IUD6 432 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 FIBINQ8TAL6 211 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 EXOC2Q96KP1 924 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 TRABDQ9H4I3 376 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 IGFLR1Q9H665 355 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 NOD2Q9HC29 1040 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 IKBKGQ9Y6K9 419 aa18.27■□□□□ 0.52
COMMD4-208ENST00000563220 CCDC78A2IDD5 438 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 A6NNZ2 444 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 MT-CO1P00395 513 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 CD70P32970 193 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 USP4Q13107 963 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 SLC1A5Q15758 541 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 TUBB8Q3ZCM7 444 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 PKN3Q6P5Z2 889 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 CCDC117Q8IWD4 279 aaPredicted RBP18.26■□□□□ 0.51
COMMD4-208ENST00000563220 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.26■□□□□ 0.51
COMMD4-208ENST00000563220 CERS2Q96G23 380 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 LMLNQ96KR4 655 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 LRRC3BQ96PB8 259 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 ZNF180Q9UJW8 692 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 TRANK1O15050 2925 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 TMEM120BA0PK00 339 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 TMCC1O94876 653 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 CYBBP04839 570 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 ATXN1LP0C7T5 689 aaKnown RBP18.26■□□□□ 0.51
COMMD4-208ENST00000563220 SCNN1BP51168 640 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 MGAT5Q09328 741 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 C4orf33Q8N1A6 199 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 DCAF4L2Q8NA75 395 aa18.26■□□□□ 0.51
COMMD4-208ENST00000563220 KCNK9Q9NPC2 374 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms