RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 DNA2P51530 1060 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MAGOHP61326 146 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 PSMC6P62333 389 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ELF3P78545 371 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 DR1Q01658 176 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GHRHRQ02643 423 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ENPEPQ07075 957 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 BFSP1Q12934 665 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 IFT88Q13099 833 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PABPC4Q13310 644 aaKnown RBP eCLIP2.6□□□□□ -1.99
SPG11-223ENST00000560858 RIPK1Q13546 671 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DYRK1AQ13627 763 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ALCAMQ13740 583 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CTTNQ14247 550 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 NEDD9Q14511 834 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DRAP1Q14919 205 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 SIX1Q15475 284 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 TWIST1Q15672 202 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SNCBQ16143 134 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CD300EQ496F6 205 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 CBWD6Q4V339 395 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 EPC2Q52LR7 807 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CBWD3Q5JTY5 395 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 KIAA1755Q5JYT7 1200 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CBWD5Q5RIA9 395 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GKAP1Q5VSY0 366 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 ATG9BQ674R7 924 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DENND2CQ68D51 928 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RINT1Q6NUQ1 792 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 TATDN1Q6P1N9 297 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 TLDC1Q6P9B6 456 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GJB7Q6PEY0 223 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RHBDF2Q6PJF5 856 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 USP17L6PQ6QN14 398 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 TMEM179Q6ZVK1 233 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SEM1Q6ZVN7 128 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 STXBP4Q6ZWJ1 553 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 C1orf186Q6ZWK4 172 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SMIM5Q71RC9 77 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PIGWQ7Z7B1 504 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DAAM2Q86T65 1068 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 C11orf74Q86VG3 221 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM228AQ86W67 206 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DDX42Q86XP3 938 aaKnown RBP eCLIP2.6□□□□□ -1.99
SPG11-223ENST00000560858 CCDC50Q8IVM0 306 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM186BQ8IYM0 893 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DAW1Q8N136 415 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GALNT16Q8N428 558 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PRELID2Q8N945 189 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CCDC197Q8NCU1 140 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 NLGN4YQ8NFZ3 816 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 LMO3Q8TAP4 145 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SLC35G2Q8TBE7 412 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FBXO25Q8TCJ0 367 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MORC4Q8TE76 937 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 U2AF1L4Q8WU68 220 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 UBLCP1Q8WVY7 318 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 IFT81Q8WYA0 676 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CTNNBL1Q8WYA6 563 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 SNX19Q92543 992 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SLC5A5Q92911 643 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GJA10Q969M2 543 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MAGOHBQ96A72 148 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 HVCN1Q96D96 273 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ARHGEF26Q96DR7 871 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CHMP6Q96FZ7 201 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RBM17Q96I25 401 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 RPS6KC1Q96S38 1066 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MYOCQ99972 504 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 HSD17B14Q9BPX1 270 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 EIF2AK1Q9BQI3 630 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 JPH2Q9BR39 696 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 ERP44Q9BS26 406 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.6□□□□□ -1.99
SPG11-223ENST00000560858 ALG8Q9BVK2 526 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 IDI2Q9BXS1 227 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 AP1M1Q9BXS5 423 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 KRTAP4-4Q9BYR3 166 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 NSRP1Q9H0G5 558 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 INTS2Q9H0H0 1204 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 DEFB129Q9H1M3 183 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DPH5Q9H2P9 285 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PABPC3Q9H361 631 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 PRDM12Q9H4Q4 367 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RABEP2Q9H5N1 569 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PSTPIP2Q9H939 334 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 KANSL2Q9H9L4 492 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ATP6V0A4Q9HBG4 840 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 VAT1LQ9HCJ6 419 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PPANQ9NQ55 473 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 AGPAT3Q9NRZ7 376 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 HAUS2Q9NVX0 235 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 EURLQ9NYK6 297 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SH3BP4Q9P0V3 963 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 SERGEFQ9UGK8 458 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 POLLQ9UGP5 575 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 AMACRQ9UHK6 382 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 LGALS13Q9UHV8 139 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CNOT7Q9UIV1 285 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 CCNL1Q9UK58 526 aaPredicted RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms