RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 DCXO43602 365 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CCZ1BP86790 482 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CCZ1P86791 482 aaPredicted RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 BNIP2Q12982 314 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 KLHDC7AQ5VTJ3 777 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CIPCQ9C0C6 399 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ZNF518BQ9C0D4 1074 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RFX7Q2KHR2 1363 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RBAK-RBAKDNI3L0D1 243 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 NR4A1P22736 598 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 LHX1P48742 406 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PTPAQ15257 358 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ILDR2Q71H61 639 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 THAP2Q9H0W7 228 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RHBGQ9H310 441 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 OAS3Q9Y6K5 1087 aaKnown RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 XKRYO14609 159 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CKMP06732 381 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SNRPB2P08579 225 aaKnown RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PRLRP16471 622 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RBM34P42696 430 aaKnown RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SPP2Q13103 211 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SLC25A25Q6KCM7 469 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ADGRF2Q8IZF7 708 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CHST4Q8NCG5 386 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 TMEM121Q9BTD3 319 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 TMEM51Q9NW97 253 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RRM1P23921 792 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PPP3R1P63098 170 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CDH17Q12864 832 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ALKBH2Q6NS38 261 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 FAM117BQ6P1L5 589 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 RAD51AP1Q96B01 352 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SLC4A5Q9BY07 1137 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 GNEQ9Y223 722 aaKnown RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PRAMEF33A0A0G2JMD5 474 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 HOXA2O43364 376 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PRAMEF10O60809 474 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 MLYCDO95822 493 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 CYP2F1P24903 491 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 MCAMP43121 646 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ACSM2AQ08AH3 577 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 LYPLAL1Q5VWZ2 237 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ACSM2BQ68CK6 577 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 FCRL4Q96PJ5 515 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 TRIM64BA6NI03 449 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SNAP23O00161 211 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 AVILO75366 819 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ENDOD1O94919 500 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 MT-CO1P00395 513 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 LSM12Q3MHD2 195 aaKnown RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 VPS26BQ4G0F5 336 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 USP45Q70EL2 814 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 TBC1D10CQ8IV04 446 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 ANKZF1Q9H8Y5 726 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 PLEKHA1Q9HB21 404 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 FBXO9Q9UK97 447 aaPredicted RBP13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 SORCS3Q9UPU3 1222 aa13.98□□□□□ -0.17
CSPG4P12-202ENST00000559989 C6orf222P0C671 652 aaPredicted RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 LEF1Q9UJU2 399 aaPredicted RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 AXIN2Q9Y2T1 843 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 C2orf71A6NGG8 1288 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TRDMT1O14717 391 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 KCNQ3O43525 872 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 RPS6KA4O75676 772 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 DBIP07108 87 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 SRCP12931 536 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 SPDYCQ5MJ68 293 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 CWF19L1Q69YN2 538 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TRIM40Q6P9F5 258 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 ZCCHC12Q6PEW1 402 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 CAVIN3Q969G5 261 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 IRX2Q9BZI1 471 aaPredicted RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 SMURF2Q9HAU4 748 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 PIM2Q9P1W9 311 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 GTF3C4Q9UKN8 822 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 NMT2O60551 498 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 PPM1BO75688 479 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 IGSF6O95976 241 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TFRCP02786 760 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 AMHR2Q16671 573 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 MARC1Q5VT66 337 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 FAM196AQ6ZSG2 479 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 LSM14AQ8ND56 463 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 SPG21Q9NZD8 308 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 DNASE1L1P49184 302 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TUBA1BP68363 451 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 ABCA11PQ4W5N1 156 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TUBA1AQ71U36 451 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 BEND5Q7L4P6 421 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 PCDH9Q9HC56 1237 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 TRNAU1APQ9NX07 287 aaKnown RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 ARL15Q9NXU5 204 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 KDM6AO15550 1401 aaPredicted RBP13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 C17orf102A2RUQ5 167 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 SLC6A2P23975 617 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 PDPRQ8NCN5 879 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 ZNF563Q8TA94 476 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 NAT14Q8WUY8 206 aa13.97□□□□□ -0.17
CSPG4P12-202ENST00000559989 ING5Q8WYH8 240 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms