RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ICMTO60725 284 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 KRT36O76013 467 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 DDHD2O94830 711 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 EOMESO95936 686 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NDUFV2P19404 249 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NMBRP28336 390 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 BRCC3P46736 316 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NDST2P52849 883 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RABGGTBP53611 331 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RAB10P61026 200 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PRKAA1Q13131 559 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 BLMHQ13867 455 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 UBAP2LQ14157 1087 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 LPIN1Q14693 890 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MAP3K21Q5TCX8 1036 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 C1orf146Q5VVC0 180 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SNX30Q5VWJ9 437 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CST9Q5W186 159 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 AFMIDQ63HM1 303 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 EPGNQ6UW88 154 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 GLB1LQ6UWU2 654 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ACAD11Q709F0 780 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MYLK4Q86YV6 388 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RGL4Q8IZJ4 473 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 AFAP1L2Q8N4X5 818 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CNTD1Q8N815 330 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TDRD5Q8NAT2 981 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PCSK9Q8NBP7 692 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 IPMKQ8NFU5 416 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ZSCAN18Q8TBC5 510 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PDCD6IPQ8WUM4 868 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ATXN7L3BQ96GX2 97 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF333Q96JL9 665 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SCYL1Q96KG9 808 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 FCRL2Q96LA5 508 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RANBP9Q96S59 729 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ADAM2Q99965 735 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 APOL2Q9BQE5 337 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PAAF1Q9BRP4 392 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 FICDQ9BVA6 458 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ACE2Q9BYF1 805 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RHOBTB2Q9BYZ6 727 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 DRC3Q9H069 523 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SIK2Q9H0K1 926 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TRPV6Q9H1D0 765 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 VCX3BQ9H321 246 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TASP1Q9H6P5 420 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CHRAC1Q9NRG0 131 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 VPS45Q9NRW7 570 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PNPOQ9NVS9 261 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NDE1Q9NXR1 346 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 IL1RAPL1Q9NZN1 696 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 IPO11Q9UI26 975 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SLC39A10Q9ULF5 831 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SCML2Q9UQR0 700 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 NOD1Q9Y239 953 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 INPP5FQ9Y2H2 1132 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SNX10Q9Y5X0 201 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 FRMPD3Q5JV73 1810 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CCDC189A1A4V9 331 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 HEATR9A2RTY3 570 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 E9PAM4 449 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF195O14628 629 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TNFRSF10BO14763 440 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 KIF1CO43896 1103 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MGEA5O60502 916 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ADAMTS4O75173 837 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PGK1P00558 417 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 AMHP03971 560 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 STMN1P16949 149 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 IGFBP6P24592 240 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ADRA1AP35348 466 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CD151P48509 253 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 AFF1P51825 1210 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SLC12A2P55011 1212 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 POU4F1Q01851 419 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 KLC1Q07866 573 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 OLIG2Q13516 323 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 LAMB3Q13751 1172 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 GRM3Q14832 879 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 SEL1L3Q68CR1 1132 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 LRRC8EQ6NSJ5 796 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 IRGCQ6NXR0 463 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CD300LGQ6UXG3 332 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 RIPOR1Q6ZS17 1223 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MAVSQ7Z434 540 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 GALNT7Q86SF2 657 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ADGRG6Q86SQ4 1221 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MON1AQ86VX9 555 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 PLD6Q8N2A8 252 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ATP6V0D2Q8N8Y2 350 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 C1orf216Q8TAB5 229 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 ACTRT2Q8TDY3 377 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 USP33Q8TEY7 942 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 WDR60Q8WVS4 1066 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 WNT2BQ93097 391 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CCDC126Q96EE4 140 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 TSPAN17Q96FV3 270 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CNDP1Q96KN2 507 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms