RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CES1P23141 567 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 RPA3P35244 121 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 SPRP35270 261 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 VHLP40337 213 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 CSE1LP55060 971 aaKnown RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 HTRA4P83105 476 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 LRRC14Q15048 493 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 UGP2Q16851 508 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ANKRD20A4Q4UJ75 823 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ANO7Q6IWH7 933 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF783Q6ZMS7 281 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF354CQ86Y25 554 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 LGI2Q8N0V4 545 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ELMOD1Q8N336 334 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 GDAP1Q8TB36 358 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 DNAJC9Q8WXX5 260 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF669Q96BR6 464 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 HMCESQ96FZ2 354 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 OXNAD1Q96HP4 312 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 NR1H4Q96RI1 486 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 PITPNM3Q9BZ71 974 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ZBP1Q9H171 429 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 IL1RAPL1Q9NZN1 696 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF212Q9UDV6 495 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 LZTS1Q9Y250 596 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 RWDD3Q9Y3V2 267 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 A0A1B0GVM2 712 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 TCAF2A6NFQ2 919 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 TIMM44O43615 452 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 PRAMEF11O60813 436 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 PEX11AO75192 247 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 FGF18O76093 207 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 GJB5O95377 273 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 C1RP00736 705 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ADH1AP07327 375 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 PTPN4P29074 926 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ADRA1AP35348 466 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ABL2P42684 1182 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 NEK3P51956 506 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 WDR4P57081 412 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 TWF1Q12792 350 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ALFQ53S48 1182 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ADGRF1Q5T601 910 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 NADSYN1Q6IA69 706 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 FAM117BQ6P1L5 589 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 TRMT10BQ6PF06 316 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 LVRNQ6Q4G3 990 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 PACS1Q6VY07 963 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ARHGAP36Q6ZRI8 547 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ARHGAP24Q8N264 748 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 RAB3IL1Q8TBN0 382 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 USP33Q8TEY7 942 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 CLP1Q92989 425 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 IGSF8Q969P0 613 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 IMP4Q96G21 291 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 PAIP2Q9BPZ3 127 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 POLR1EQ9GZS1 481 aaKnown RBP12.82□□□□□ -0.36
SHMT2-229ENST00000557348 VCX3BQ9H321 246 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 VCX3AQ9NNX9 186 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 NDFIP2Q9NV92 336 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 STOML2Q9UJZ1 356 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF510Q9Y2H8 683 aa12.82□□□□□ -0.36
SHMT2-229ENST00000557348 HTTP42858 3142 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 ILVBLA1L0T0 632 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 MAGEA13PA6NCF6 341 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 CXorf49A8MYA2 514 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 LILRB3O75022 631 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 CNTN5O94779 1100 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 FGF19O95750 216 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 PYGBP11216 843 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 ITGB8P26012 769 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 CRHR1P34998 444 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 POLD2P49005 469 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 FPGSQ05932 587 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 CUL3Q13618 768 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF235Q14590 738 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 INSCQ1MX18 579 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 GREB1Q4ZG55 1949 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 PKN3Q6P5Z2 889 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 KYAT3Q6YP21 454 aaKnown RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 SH2D5Q6ZV89 423 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 NLRP9Q7RTR0 991 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 OTOP3Q7RTS5 596 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 DNAJB7Q7Z6W7 309 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 IPMKQ8NFU5 416 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 PHOSPHO2Q8TCD6 241 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 TCP10LQ8TDR4 215 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 PEX13Q92968 403 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 PABPC5Q96DU9 382 aaKnown RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 GCNAQ96QF7 691 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 RANBP9Q96S59 729 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 KLF16Q9BXK1 252 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 EMILIN2Q9BXX0 1053 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 YIPF3Q9GZM5 350 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 MTIF3Q9H2K0 278 aaKnown RBP12.81□□□□□ -0.36
SHMT2-229ENST00000557348 SMYD2Q9NRG4 433 aa12.81□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-229ENST00000557348 HEATR9A2RTY3 570 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 ZBBXA8MT70 800 aa12.8□□□□□ -0.36
SHMT2-229ENST00000557348 TEX28O15482 410 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms