RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 CARNMT1Q8N4J0 409 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 KLK6Q92876 244 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 ZNF775Q96BV0 537 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 BTN2A3PQ96KV6 586 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 RPL10LQ96L21 214 aaKnown RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 KREMEN1Q96MU8 473 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 NUCKS1Q9H1E3 243 aaKnown RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 POLR1BQ9H9Y6 1135 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 COL27A1Q8IZC6 1860 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 EDDM13A0A1B0GTR0 161 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 BICDL2A1A5D9 508 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 GOLGA6L4A6NEF3 574 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 PIK3R2O00459 728 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CAPN5O15484 640 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 NEBLO76041 1014 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 IL1BP01584 269 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 GLI1P08151 1106 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 C5AR1P21730 350 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 RXRGP48443 463 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 STK19P49842 368 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 YWHAZP63104 245 aaKnown RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ECT2LQ008S8 904 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 SRSF6Q13247 344 aaKnown RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 MTA1Q13330 715 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CCDC40Q4G0X9 1142 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ZNF542PQ5EBM4 170 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CDCP2Q5VXM1 449 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 SYPL2Q5VXT5 272 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 NAPEPLDQ6IQ20 393 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CCDC81Q6ZN84 652 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 RRAGAQ7L523 313 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ENOSF1Q7L5Y1 443 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 TAC4Q86UU9 113 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ARHGEF19Q8IW93 802 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CCDC117Q8IWD4 279 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CFAP52Q8N1V2 620 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ATXN7L3BQ96GX2 97 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 DEPDC7Q96QD5 511 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 MED15Q96RN5 788 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 SRPK1Q96SB4 655 aaKnown RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 PRMT1Q99873 361 aaKnown RBP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 TRIM55Q9BYV6 548 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 MIS12Q9H081 205 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 THAP9Q9H5L6 903 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ERVMER34-1Q9H9K5 563 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 POPDC2Q9HBU9 364 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 FZD3Q9NPG1 666 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 BRD7Q9NPI1 651 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.28□□□□□ -0.76
SCFD1-220ENST00000556486 SLCO3A1Q9UIG8 710 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 MAN1B1Q9UKM7 699 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 ERVW-1Q9UQF0 538 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 NAALADL1Q9UQQ1 740 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 CEP83Q9Y592 693 aa10.28□□□□□ -0.76
SCFD1-220ENST00000556486 TMEM238LA0A1B0GVL6 79 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 KCNU1A8MYU2 1149 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 SLC7A4O43246 635 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 KLF4O43474 513 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 MED7O43513 233 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 MOCS3O95396 460 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 TRUB2O95900 331 aaKnown RBP10.27□□□□□ -0.77
SCFD1-220ENST00000556486 APOEP02649 317 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 AFPP02771 609 aaKnown RBP10.27□□□□□ -0.77
SCFD1-220ENST00000556486 SLC2A3P11169 496 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 PRLRP16471 622 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 GOT1P17174 413 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 DGKAP23743 735 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 NUDT1P36639 197 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 LSSP48449 732 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 OXCT1P55809 520 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 NUCB2P80303 420 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 E2F1Q01094 437 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 SULT2A1Q06520 285 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 MORC3Q14149 939 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 DRAP1Q14919 205 aaPredicted RBP10.27□□□□□ -0.77
SCFD1-220ENST00000556486 FRS2Q8WU20 508 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 ERCC4Q92889 916 aaPredicted RBP10.27□□□□□ -0.77
SCFD1-220ENST00000556486 PTPRN2Q92932 1015 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 ARRDC3Q96B67 414 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 FAM149B1Q96BN6 582 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 RHOVQ96L33 236 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 FAM81BQ96LP2 452 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 APOLD1Q96LR9 279 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 ABCG4Q9H172 646 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 THSD1Q9NS62 852 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 ARHGAP20Q9P2F6 1191 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 TJP2Q9UDY2 1190 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 CYTH4Q9UIA0 394 aa10.27□□□□□ -0.77
SCFD1-220ENST00000556486 XPO7Q9UIA9 1087 aaKnown RBP10.27□□□□□ -0.77
SCFD1-220ENST00000556486 LY6G6EA0A0G2JKS1 128 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 TCAF2A6NFQ2 919 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 E5RJQ4 531 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 K7ENP7 123 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 AGRPO00253 132 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 FBXO24O75426 580 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 CALCAP01258 141 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 RHOQP17081 205 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 TACR2P21452 398 aa10.26□□□□□ -0.77
SCFD1-220ENST00000556486 TGM2P21980 687 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms