RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 HIF1AQ16665 826 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 PLEKHG6Q3KR16 790 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 TTC31Q49AM3 519 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 RNASEH2BQ5TBB1 312 aaKnown RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ARHGAP17Q68EM7 881 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ARCQ7LC44 396 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 LIMS2Q7Z4I7 341 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 MIB1Q86YT6 1006 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 RFX6Q8HWS3 928 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 C10orf67Q8IYJ2 551 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ADGRG2Q8IZP9 1017 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 WDTC1Q8N5D0 677 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 BAHD1Q8TBE0 780 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 GRAMD1AQ96CP6 724 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 FUBP3Q96I24 572 aaKnown RBP eCLIP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 HEXIM2Q96MH2 286 aaKnown RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 MED10Q9BTT4 135 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 MAK16Q9BXY0 300 aaKnown RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 SDCBP2Q9H190 292 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 SLC6A17Q9H1V8 727 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 CD248Q9HCU0 757 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ARHGEF4Q9NR80 690 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 KLHL11Q9NVR0 708 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 TSPAN16Q9UKR8 245 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 CYP8B1Q9UNU6 501 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 A0A0A0MRY4 1105 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 A0A1W2PQF6 199 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 MDM4O15151 490 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 TRIM24O15164 1050 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ATXN7O15265 892 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 TP73O15350 636 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 CST8O60676 142 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 DKK1O94907 266 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 GJB6O95452 261 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 GSTA1P08263 222 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 FAM163BP0C2L3 166 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ZFXP17010 805 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 PTPN1P18031 435 aaKnown RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 DRD4P21917 467 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SDC4P31431 198 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 GPD2P43304 727 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 MAGEA11P43364 429 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 NDST1P52848 882 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 USP46P62068 366 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 OTUD4Q01804 1114 aaKnown RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 KRT81Q14533 505 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 TRIP13Q15645 432 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 LONRF1Q17RB8 773 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SKIDA1Q1XH10 827 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 GOLGA7BQ2TAP0 167 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 HSF5Q4G112 596 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 BOLA3Q53S33 107 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 FAM171BQ6P995 826 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SLC36A4Q6YBV0 504 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ANKS1BQ7Z6G8 1248 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SCUBE3Q8IX30 993 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 CCDC13Q8IYE1 715 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 PDIK1LQ8N165 341 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ZNF843Q8N446 348 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 GBP7Q8N8V2 638 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 KCTD6Q8NC69 237 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ACTL9Q8TC94 416 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 PCED1BQ96HM7 432 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 DCBLD2Q96PD2 775 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ZNF670Q9BS34 389 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 RNF38Q9H0F5 515 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 DPEP3Q9H4B8 488 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 ZWILCHQ9H900 591 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SSU72Q9NP77 194 aaKnown RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 SAYSD1Q9NPB0 183 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 PSMC3IPQ9P2W1 217 aaPredicted RBP11.37□□□□□ -0.59
SHMT2-216ENST00000554975 RAI2Q9Y5P3 530 aa11.37□□□□□ -0.59
SHMT2-216ENST00000554975 PTPN13Q12923 2485 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 TMEM120BA0PK00 339 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 C2CD4BA6NLJ0 364 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 GOLGA8CPA6NN73 597 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 TRUB2O95900 331 aaKnown RBP11.36□□□□□ -0.59
SHMT2-216ENST00000554975 IFNB1P01574 187 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 KRT10P13645 584 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 NDUFV2P19404 249 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 MIPP30301 263 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 STX2P32856 288 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 GRIA2P42262 883 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 PTPN9P43378 593 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 ABCG1P45844 678 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 SLCO1A2P46721 670 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 SEC24CP53992 1094 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 SLC8A3P57103 927 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 EIF3EP60228 445 aaKnown RBP11.36□□□□□ -0.59
SHMT2-216ENST00000554975 IL9RQ01113 521 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 BNC1Q01954 994 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 BST2Q10589 180 aaKnown RBP11.36□□□□□ -0.59
SHMT2-216ENST00000554975 IFRD2Q12894 506 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-216ENST00000554975 ORC1Q13415 861 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 NOMO1Q15155 1222 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 KYNUQ16719 465 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 OR6B2Q6IFH4 312 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 VSTM1Q6UX27 236 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 RABEPKQ7Z6M1 372 aa11.36□□□□□ -0.59
SHMT2-216ENST00000554975 ACOT1Q86TX2 421 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms