RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 XKR5Q6UX68 686 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 C14orf80Q86SX3 495 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 CIR1Q86X95 450 aaPredicted RBP12.07□□□□□ -0.48
SRP54-203ENST00000553544 ARL14Q8N4G2 192 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 MSANTD4Q8NCY6 345 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 NEK11Q8NG66 645 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 OR52K2Q8NGK3 314 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 KLK6Q92876 244 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 C1orf74Q96LT6 269 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 PCDHB18PQ96TA0 734 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 TBCBQ99426 244 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 FUCA2Q9BTY2 467 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 TKTL2Q9H0I9 626 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 WDCPQ9H6R7 721 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 DNAJC28Q9NX36 388 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.07□□□□□ -0.48
SRP54-203ENST00000553544 SLC25A13Q9UJS0 675 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 VANGL2Q9ULK5 521 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 PCDHGA8Q9Y5G5 932 aa12.07□□□□□ -0.48
SRP54-203ENST00000553544 FAM170AA1A519 330 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 CPED1A4D0V7 1026 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 DRGXA6NNA5 263 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 ENDOD1O94919 500 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 KRT10P13645 584 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 TGM2P21980 687 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 HNRNPA2B1P22626 353 aaKnown RBP12.06□□□□□ -0.48
SRP54-203ENST00000553544 NUMBP49757 651 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 GSCP56915 257 aaPredicted RBP12.06□□□□□ -0.48
SRP54-203ENST00000553544 TAS2R38P59533 333 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 SKOR1P84550 965 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 CENPCQ03188 943 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 DEUP1Q05D60 604 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 NFATC3Q12968 1075 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 ZNF284Q2VY69 593 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 ZNF542PQ5EBM4 170 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 TRIM72Q6ZMU5 477 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 Q6ZSR6 202 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 HORMAD1Q86X24 394 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 OR13H1Q8NG92 308 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 ATXN7L3BQ96GX2 97 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 RPRD1AQ96P16 312 aaPredicted RBP12.06□□□□□ -0.48
SRP54-203ENST00000553544 CCNL2Q96S94 520 aaPredicted RBP12.06□□□□□ -0.48
SRP54-203ENST00000553544 MYOCQ99972 504 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 FEM1AQ9BSK4 669 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.06□□□□□ -0.48
SRP54-203ENST00000553544 TBC1D30Q9Y2I9 924 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 OR51B4Q9Y5P0 310 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 HS3ST3A1Q9Y663 406 aa12.06□□□□□ -0.48
SRP54-203ENST00000553544 IGLV3-10A0A075B6K4 115 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 LY6G6EA0A0G2JKS1 128 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 GOLGA8SH3BPF8 625 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 TEX33O43247 280 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 BNIP3LO60238 219 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 CLDN11O75508 207 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 NEBLO76041 1014 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 PCDH8O95206 1070 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 GGCXP38435 758 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 MLLT3P42568 568 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 INHBCP55103 352 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 CDH4P55283 916 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 CLDN2P57739 230 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 ZNF177Q13360 481 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 CDKN3Q16667 212 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 ZSCAN23Q3MJ62 389 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 ACBD5Q5T8D3 534 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 CAVIN1Q6NZI2 390 aaKnown RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 ZCCHC8Q6NZY4 707 aaKnown RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 FOXR1Q6PIV2 292 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 RBM44Q6ZP01 1051 aaKnown RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 EMC1Q8N766 993 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 TMIEQ8NEW7 156 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 WDR36Q8NI36 951 aaKnown RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 SLC30A5Q8TAD4 765 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 PRR11Q96HE9 360 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 PCMTD1Q96MG8 357 aaPredicted RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 CFAP57Q96MR6 1250 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 SIK2Q9H0K1 926 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 RTN4Q9NQC3 1192 aaKnown RBP12.05□□□□□ -0.48
SRP54-203ENST00000553544 DYRK4Q9NR20 520 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 TMPRSS4Q9NRS4 437 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 SALL4Q9UJQ4 1053 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 PAXBP1Q9Y5B6 917 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 ENTPD2Q9Y5L3 495 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 CSNK1G3Q9Y6M4 447 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 U3KQA8 63 aa12.05□□□□□ -0.48
SRP54-203ENST00000553544 DOCK9Q9BZ29 2069 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 A0A1W2PNU3 283 aaPredicted RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 C2CD4BA6NLJ0 364 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 SMTNL1A8MU46 457 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 CDRT15L2A8MXV6 281 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 H3BM21 787 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 KPNA3O00505 521 aaPredicted RBP12.04□□□□□ -0.48
SRP54-203ENST00000553544 TCEA3O75764 348 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 CNTN5O94779 1100 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 TNFSF15O95150 251 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 GJB6O95452 261 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 CSF2P04141 144 aa12.04□□□□□ -0.48
SRP54-203ENST00000553544 SRSF1Q07955 248 aaKnown RBP eCLIP12.04□□□□□ -0.48
SRP54-203ENST00000553544 IQCB1Q15051 598 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms