RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MIPOL1Q8TD10 442 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 NXNL1Q96CM4 212 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 TNIP3Q96KP6 325 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 OMDQ99983 421 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 DUSP16Q9BY84 665 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 MRPL46Q9H2W6 279 aaKnown RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 GTSE1Q9NYZ3 720 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 DNAJC25-GNG10A0A024R161 153 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 GABRB3P28472 473 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 POLD2P49005 469 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 INTS6LQ5JSJ4 861 aaKnown RBP17.75■□□□□ 0.43
SYNE3-202ENST00000553340 TSTD2Q5T7W7 516 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 LPCAT2Q7L5N7 544 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 LINC00523Q86TU6 105 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 HERC6Q8IVU3 1022 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 SIX6OS1Q8N1H7 587 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 NPWQ8N729 165 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 LPGAT1Q92604 370 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 RMND5BQ96G75 393 aaPredicted RBP17.75■□□□□ 0.43
SYNE3-202ENST00000553340 GPR78Q96P69 363 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 EFHD1Q9BUP0 239 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 TRPC7Q9HCX4 862 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 RNF19AQ9NV58 838 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 UBQLN1Q9UMX0 589 aaKnown RBP17.75■□□□□ 0.43
SYNE3-202ENST00000553340 COL1A2P08123 1366 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 NFKBIEO00221 500 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 CAPN15O75808 1086 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 CNMDO75829 334 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 FGFR3P22607 806 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 SLC7A1P30825 629 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 HCAR3P49019 387 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 ARHGAP1Q07960 439 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 LAMC2Q13753 1193 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 LRP8Q14114 963 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 ZNF460Q14592 562 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 SLC27A1Q6PCB7 646 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 MAMDC4Q6UXC1 1216 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 MYO1HQ8N1T3 1032 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 NTAN1Q96AB6 310 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 SLC2A13Q96QE2 648 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 SPAG4Q9NPE6 437 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 CACNA2D2Q9NY47 1150 aa17.75■□□□□ 0.43
SYNE3-202ENST00000553340 TRIM24O15164 1050 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 USP2O75604 605 aaPredicted RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 PGK1P00558 417 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 NDUFV1P49821 464 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TUBA4AP68366 448 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SEMA3BQ13214 749 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SQLEQ14534 574 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 LPIN1Q14693 890 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 DALRD3Q5D0E6 543 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 MTX3Q5HYI7 312 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 GJC2Q5T442 439 aaPredicted RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TRIM67Q6ZTA4 783 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 CHSY3Q70JA7 882 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 PBXIP1Q96AQ6 731 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TMIGD2Q96BF3 282 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TEKT5Q96M29 485 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 ZNF560Q96MR9 790 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 IPO11Q9UI26 975 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SARDHQ9UL12 918 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 FAM95CA0A1B0GW59 222 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 PIRO00625 290 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SPTLC1O15269 473 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 CD4P01730 458 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 GALK1P51570 392 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 KPNA2P52292 529 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 FASTKQ14296 549 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 REP15Q6BDI9 236 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 CEP97Q8IW35 865 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SPATA6LQ8N4H0 392 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 AFAP1L2Q8N4X5 818 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 RNF169Q8NCN4 708 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 B3GALNT2Q8NCR0 500 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SPPL2BQ8TCT7 592 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TRPC4APQ8TEL6 797 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 DUS3LQ96G46 650 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 FAR2Q96K12 515 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 ZNF512Q96ME7 567 aaPredicted RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 HNRNPABQ99729 332 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 SLC29A1Q99808 456 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 MRPL57Q9BQC6 102 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 EIF2AQ9BY44 585 aaKnown RBP17.74■□□□□ 0.43
SYNE3-202ENST00000553340 POMKQ9H5K3 350 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 OLAHQ9NV23 265 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 GDAP2Q9NXN4 497 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 HACD3Q9P035 362 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 FIS1Q9Y3D6 152 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 PPP2R3BQ9Y5P8 575 aa17.74■□□□□ 0.43
SYNE3-202ENST00000553340 TCRBV3S1A0A5B6 114 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PRORSD1PA6NEY8 169 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PSMD12O00232 456 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 PSMD3O43242 534 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 JCHAINP01591 159 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 NPR3P17342 541 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 NELFEP18615 380 aaKnown RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 HOXA11P31270 313 aaPredicted RBP17.73■□□□□ 0.43
SYNE3-202ENST00000553340 SULT2A1Q06520 285 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 GALNT2Q10471 571 aa17.73■□□□□ 0.43
SYNE3-202ENST00000553340 SCAPQ12770 1279 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms