RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SELENONQ9NZV5 590 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 PAK5Q9P286 719 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ORC6Q9Y5N6 252 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 AP4B1Q9Y6B7 739 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 A0A0B4J269 797 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ANGPT2O15123 496 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 PSTPIP1O43586 416 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CYP3A4P08684 503 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 HOXC6P09630 235 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 THRAP10827 490 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 STMN1P16949 149 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SKIV2L2P42285 1042 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 GPC3P51654 580 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 BAATQ14032 418 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 DGKDQ16760 1214 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 C1orf220Q5T0J3 134 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MFSD5Q6N075 450 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 OTOP1Q7RTM1 612 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ADCK1Q86TW2 530 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MCATQ8IVS2 390 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 GLIS1Q8NBF1 620 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 STKLD1Q8NE28 680 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 DGCR14Q96DF8 476 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 RMND5BQ96G75 393 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 VPS39Q96JC1 886 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 NOL6Q9H6R4 1146 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 WDR55Q9H6Y2 383 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 EFCAB1Q9HAE3 211 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 PCDH9Q9HC56 1237 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TRIM39Q9HCM9 518 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TBC1D22BQ9NU19 505 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 PNPOQ9NVS9 261 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ZIM2Q9NZV7 527 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 NYAP2Q9P242 653 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 COL4A4P53420 1690 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 FRMPD4Q14CM0 1322 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 RALGAPA2Q2PPJ7 1873 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TRANK1O15050 2925 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SZT2Q5T011 3432 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ANKRD12Q6UB98 2062 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ADARB2-AS1A8MUL3 147 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SHOXO15266 292 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 PRODHO43272 600 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ADRB2P07550 413 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 EPHA3P29320 983 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MYL6P60660 151 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CDC16Q13042 620 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CAPRIN1Q14444 709 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ZIK1Q3SY52 487 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 GPR107Q5VW38 600 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MYO1HQ8N1T3 1032 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SPATA6LQ8N4H0 392 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TSPAN14Q8NG11 270 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 DDI1Q8WTU0 396 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 NAT14Q8WUY8 206 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SCLYQ96I15 445 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 KREMEN1Q96MU8 473 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 DGCR6LQ9BY27 220 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 WNT10AQ9GZT5 417 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 FAM96AQ9H5X1 160 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ARMC7Q9H6L4 198 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 FRRS1LQ9P0K9 344 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 NDOR1Q9UHB4 597 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 DAPK2Q9UIK4 370 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SHOC2Q9UQ13 582 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CDYLQ9Y232 598 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TNPO3Q9Y5L0 923 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SNX9Q9Y5X1 595 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TCRBV9S1A1TA0A576 114 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 WDR27A2RRH5 827 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 KCNK1O00180 336 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TSPAN6O43657 245 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 FOXD2O60548 495 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TSPAN3O60637 253 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 LDHAP00338 332 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 KRT8P05787 483 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 NFKBIAP25963 317 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 RBL1P28749 1068 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 NAGLUP54802 743 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PRSS53Q2L4Q9 553 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GALNTL6Q49A17 601 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 HYIQ5T013 277 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ANKRD22Q5VYY1 191 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 OLFML1Q6UWY5 402 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ANGPTL8Q6UXH0 198 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 C20orf204Q6ZNR8 217 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 UNC45BQ8IWX7 931 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TDRD5Q8NAT2 981 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SHKBP1Q8TBC3 707 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PIWIL2Q8TC59 973 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 GFM2Q969S9 779 aaKnown RBP5.55□□□□□ -1.52
LIMA1-203ENST00000547825 PHF21BQ96EK2 531 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 HSPBAP1Q96EW2 488 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ZFYVE19Q96K21 471 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 TAAR1Q96RJ0 339 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 EBF4Q9BQW3 602 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 SPATA16Q9BXB7 569 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 ARHGAP39Q9C0H5 1083 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 MCOLN1Q9GZU1 580 aa5.55□□□□□ -1.52
LIMA1-203ENST00000547825 RSAD1Q9HA92 442 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms