RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ZNF212Q9UDV6 495 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 RELNP78509 3460 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 DRGXA6NNA5 263 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 LMO7DNF2Z398 122 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 FPGTO14772 594 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SUV39H1O43463 412 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 HSF2BPO75031 334 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 GRAP2O75791 330 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 ZMPSTE24O75844 475 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 LETM1O95202 739 aaPredicted RBP13.07□□□□□ -0.32
USP28-212ENST00000544750 ITGB2P05107 769 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 RHOCP08134 193 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SLC5A2P31639 672 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 NFKB2Q00653 900 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 EFHC1Q5JVL4 640 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 PARS2Q7L3T8 475 aaKnown RBP13.07□□□□□ -0.32
USP28-212ENST00000544750 B3GNT8Q7Z7M8 397 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 DENND6BQ8NEG7 585 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 BTN2A2Q8WVV5 523 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SGF29Q96ES7 293 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SEMA3CQ99985 751 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 LRRC61Q9BV99 259 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SRRTQ9BXP5 876 aaKnown RBP13.07□□□□□ -0.32
USP28-212ENST00000544750 CLPBQ9H078 707 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SIK2Q9H0K1 926 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 LMBRD1Q9NUN5 540 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 ARHGEF38Q9NXL2 777 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SPASTQ9UBP0 616 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 HEMK1Q9Y5R4 338 aaPredicted RBP13.07□□□□□ -0.32
USP28-212ENST00000544750 ANKRD36A6QL64 1941 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 SDK2Q58EX2 2172 aa13.07□□□□□ -0.32
USP28-212ENST00000544750 IGLV3-10A0A075B6K4 115 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 IGLON5A6NGN9 336 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 PPP1R3GB7ZBB8 358 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 BIN1O00499 593 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 PLD2O14939 933 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 MED7O43513 233 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 ADCY5O95622 1261 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 CD160O95971 181 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 UGT1A5P35504 534 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 ABL2P42684 1182 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 CXCR3P49682 368 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 ADKP55263 362 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 CETN1Q12798 172 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 EIF3IQ13347 325 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 C1orf61Q13536 156 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 SPIDRQ14159 915 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 TGIF1Q15583 401 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 PRRT3Q5FWE3 981 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 OLFML1Q6UWY5 402 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 FAM183BPQ6ZVS7 135 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 OR7D4Q8NG98 312 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 EXTL1Q92935 676 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 CENPTQ96BT3 561 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 NPY6RQ99463 290 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 HEPHQ9BQS7 1158 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 GTPBP4Q9BZE4 634 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 CEP44Q9C0F1 390 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 PIGVQ9NUD9 493 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 APOBEC3BQ9UH17 382 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 IPO11Q9UI26 975 aaKnown RBP13.06□□□□□ -0.32
USP28-212ENST00000544750 GGT7Q9UJ14 662 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 RABGEF1Q9UJ41 708 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 PADI4Q9UM07 663 aa13.06□□□□□ -0.32
USP28-212ENST00000544750 NBASA2RRP1 2371 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 BECN2A8MW95 431 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 M0QYT0 321 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 YY2O15391 372 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 THAP12O43422 761 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 TSPAN6O43657 245 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 DAB1O75553 588 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 ENDOD1O94919 500 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 GJB6O95452 261 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 KRT5P13647 590 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 TFE3P19532 575 aaPredicted RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 GNA15P30679 374 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 NOS2P35228 1153 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 RECQLP46063 649 aaPredicted RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 RPIAP49247 311 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 SERPINH1P50454 418 aaKnown RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 CCNHP51946 323 aaPredicted RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 ARF5P84085 180 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 NME3Q13232 169 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 CAMK4Q16566 473 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 CCDC40Q4G0X9 1142 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 CARD16Q5EG05 197 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 TTI2Q6NXR4 508 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 ATG14Q6ZNE5 492 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 USP53Q70EK8 1073 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 SLC26A9Q7LBE3 791 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 TRIM59Q8IWR1 403 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 PHACTR4Q8IZ21 702 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 FBXO39Q8N4B4 442 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 PCDH20Q8N6Y1 951 aaKnown RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 ZNF397Q8NF99 534 aaPredicted RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 GLMNQ92990 594 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 NT5C3BQ969T7 300 aa13.05□□□□□ -0.32
USP28-212ENST00000544750 DHTKD1Q96HY7 919 aaPredicted RBP13.05□□□□□ -0.32
USP28-212ENST00000544750 PPP1R13BQ96KQ4 1090 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms