RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ACP1P24666 158 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 RFC1P35251 1148 aaPredicted RBP13.35□□□□□ -0.27
RTN3-207ENST00000536011 ACVRL1P37023 503 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 HDAC4P56524 1084 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 HNRNPKP61978 463 aaKnown RBP eCLIP13.35□□□□□ -0.27
RTN3-207ENST00000536011 DAB2P98082 770 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 E2F1Q01094 437 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 RAD51Q06609 339 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 CYP4F3Q08477 520 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 SGCGQ13326 291 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 ZNF805Q5CZA5 627 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 ARTNQ5T4W7 220 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 HES3Q5TGS1 186 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 SEL1L3Q68CR1 1132 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 KYAT3Q6YP21 454 aaKnown RBP13.35□□□□□ -0.27
RTN3-207ENST00000536011 PTAR1Q7Z6K3 402 aaPredicted RBP13.35□□□□□ -0.27
RTN3-207ENST00000536011 ABI3BPQ7Z7G0 1075 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 SLFN11Q7Z7L1 901 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 PHLDB2Q86SQ0 1253 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 OR13H1Q8NG92 308 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 OR2AP1Q8NGE2 309 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 OR4C6Q8NH72 309 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 JOSD2Q8TAC2 188 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 ARHGEF2Q92974 986 aaKnown RBP13.35□□□□□ -0.27
RTN3-207ENST00000536011 ERGIC2Q96RQ1 377 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 EPAS1Q99814 870 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 SLC17A9Q9BYT1 436 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 TM6SF2Q9BZW4 377 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 FZD3Q9NPG1 666 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 RALYQ9UKM9 306 aaKnown RBP13.35□□□□□ -0.27
RTN3-207ENST00000536011 CA5BQ9Y2D0 317 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 FADS3Q9Y5Q0 445 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 HS3ST3A1Q9Y663 406 aa13.35□□□□□ -0.27
RTN3-207ENST00000536011 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 SIGLEC16A6NMB1 481 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 KRIT1O00522 736 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 FPGTO14772 594 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 POP4O95707 220 aaKnown RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 FERP16591 822 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 DGKAP23743 735 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 EPHB2P29323 1055 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 HTR7P34969 479 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 RABIFP47224 123 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 ZNF143P52747 638 aaPredicted RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 PTP4A2Q12974 167 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 PROX2Q3B8N5 592 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 PARP15Q460N3 678 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 GCNT7Q6ZNI0 430 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 Q6ZSR6 202 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 MON1BQ7L1V2 547 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 PARS2Q7L3T8 475 aaKnown RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 CACTIN-AS1Q8N1I8 211 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 CCDC185Q8N715 623 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 RTL3Q8N8U3 475 aaKnown RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 DENND6BQ8NEG7 585 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 GDAP1L1Q96MZ0 367 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 CNPY3Q9BT09 278 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 DUSP23Q9BVJ7 150 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 C1QTNF7Q9BXJ2 289 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 CATSPERBQ9H7T0 1116 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 USP29Q9HBJ7 922 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 NCKIPSDQ9NZQ3 722 aa13.34□□□□□ -0.27
RTN3-207ENST00000536011 IPO11Q9UI26 975 aaKnown RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 ZFR2Q9UPR6 939 aaKnown RBP13.34□□□□□ -0.27
RTN3-207ENST00000536011 C16orf96A6NNT2 1141 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 FAM72CH0Y354 149 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 FGF10O15520 208 aaPredicted RBP13.33□□□□□ -0.28
RTN3-207ENST00000536011 BUB1O43683 1085 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 SIGLEC6O43699 453 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 KDELR3O43731 214 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 PIAS2O75928 621 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 IGSF6O95976 241 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 DUSP3P51452 185 aaPredicted RBP13.33□□□□□ -0.28
RTN3-207ENST00000536011 CLDN2P57739 230 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 YBEYP58557 167 aaPredicted RBP13.33□□□□□ -0.28
RTN3-207ENST00000536011 TARDBPQ13148 414 aaKnown RBP eCLIP13.33□□□□□ -0.28
RTN3-207ENST00000536011 INO80DQ53TQ3 878 aaPredicted RBP13.33□□□□□ -0.28
RTN3-207ENST00000536011 CCDC183Q5T5S1 534 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 FAM72AQ5TYM5 149 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 FAM72DQ6L9T8 149 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 SCYL2Q6P3W7 929 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 DCUN1D2Q6PH85 259 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 WDR59Q6PJI9 974 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 PARGQ86W56 976 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 FAM72BQ86X60 149 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 MARCH9Q86YJ5 346 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 ASB12Q8WXK4 309 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 RFFLQ8WZ73 363 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 MCEEQ96PE7 176 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 LENG8Q96PV6 779 aaPredicted RBP13.33□□□□□ -0.28
RTN3-207ENST00000536011 PCDHB18PQ96TA0 734 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 AGPAT1Q99943 283 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 NRSN2Q9GZP1 204 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 NDFIP2Q9NV92 336 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 DNAJC28Q9NX36 388 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 NLGN3Q9NZ94 848 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 MYO6Q9UM54 1294 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 NEU3Q9UQ49 428 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 CLCA2Q9UQC9 943 aa13.33□□□□□ -0.28
RTN3-207ENST00000536011 KNTC1P50748 2209 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms