RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 CDK17Q00537 523 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 SGCGQ13326 291 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 TAF5Q15542 800 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 MEA1Q16626 185 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 SKIDA1Q1XH10 827 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 FOXD4L5Q5VV16 416 aaPredicted RBP11.15□□□□□ -0.62
DDX41-216ENST00000513562 ATL3Q6DD88 541 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 LINGO4Q6UY18 593 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 PARS2Q7L3T8 475 aaKnown RBP11.15□□□□□ -0.62
DDX41-216ENST00000513562 TMEM110Q86TL2 294 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 ZFAND4Q86XD8 727 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 PTRH1Q86Y79 214 aaKnown RBP11.15□□□□□ -0.62
DDX41-216ENST00000513562 PPM1KQ8N3J5 372 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 SDR16C5Q8N3Y7 309 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 FAM26EQ8N5C1 309 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 FOXD4L4Q8WXT5 416 aaPredicted RBP11.15□□□□□ -0.62
DDX41-216ENST00000513562 TMEM159Q96B96 161 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 NT5C1BQ96P26 610 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 SLC2A13Q96QE2 648 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 MED15Q96RN5 788 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 CPEB1Q9BZB8 566 aaKnown RBP11.15□□□□□ -0.62
DDX41-216ENST00000513562 SLC13A1Q9BZW2 595 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 FOXJ2Q9P0K8 574 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 DACH1Q9UI36 760 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 RCOR1Q9UKL0 485 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 PCDHB11Q9Y5F2 797 aa11.15□□□□□ -0.62
DDX41-216ENST00000513562 DOPEY2Q9Y3R5 2298 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 SYNJ2BP-COX16A0A087WUM0 186 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 C9orf172C9J069 976 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 TSPAN6O43657 245 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CNTN5O94779 1100 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CELA2BP08218 269 aaPredicted RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 CMA1P23946 247 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CD82P27701 267 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 NOS2P35228 1153 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 IGFALSP35858 605 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 ETV5P41161 510 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CASRP41180 1078 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 THOP1P52888 689 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 YPEL5P62699 121 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 ZFP36L1Q07352 338 aaKnown RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 KCNAB2Q13303 367 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 IGFBP7Q16270 282 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 C4orf17Q53FE4 359 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 DENND1BQ6P3S1 775 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 BORAQ6PGQ7 559 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 LVRNQ6Q4G3 990 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 MACC1Q6ZN28 852 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 SETD3Q86TU7 594 aaPredicted RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 FSTL5Q8N475 847 aaPredicted RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 PCDH19Q8TAB3 1148 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 RAB7BQ96AH8 199 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CENPTQ96BT3 561 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 CEP44Q9C0F1 390 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 LRRN3Q9H3W5 708 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 COX16Q9P0S2 106 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 GULP1Q9UBP9 304 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 TUBD1Q9UJT1 453 aa11.14□□□□□ -0.63
DDX41-216ENST00000513562 USP9YO00507 2555 aaPredicted RBP11.14□□□□□ -0.63
DDX41-216ENST00000513562 AHCTF1Q8WYP5 2266 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 A0A0D9SEW6 157 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 M0QYT0 321 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 PMM2O15305 246 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 PAGE1O75459 146 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ENDOD1O94919 500 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 F13A1P00488 732 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 GLI1P08151 1106 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ABL2P42684 1182 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 FMO5P49326 533 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 SERPINH1P50454 418 aaKnown RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 CCNHP51946 323 aaPredicted RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 POLE2P56282 527 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 GCNT1Q02742 428 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ELOCQ15369 112 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ALFQ53S48 1182 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 FAXCQ5TGI0 409 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 SMYD4Q8IYR2 804 aaPredicted RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 ZNF683Q8IZ20 524 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 DEFB106AQ8N104 65 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 PCDH20Q8N6Y1 951 aaKnown RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 OR6C4Q8NGE1 309 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 SCG3Q8WXD2 468 aaKnown RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 USP7Q93009 1102 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 HEPHQ9BQS7 1158 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 SLC12A9Q9BXP2 914 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 B3GNT4Q9C0J1 378 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 METTL14Q9HCE5 456 aaKnown RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 SIRPGQ9P1W8 387 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ARMCX3Q9UH62 379 aaPredicted RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 GGT7Q9UJ14 662 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ANAPC2Q9UJX6 822 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 CFAP45Q9UL16 551 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 DOLKQ9UPQ8 538 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 CNTN6Q9UQ52 1028 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 ITM2BQ9Y287 266 aa11.13□□□□□ -0.63
DDX41-216ENST00000513562 USP9XQ93008 2570 aaPredicted RBP11.13□□□□□ -0.63
DDX41-216ENST00000513562 FAM237AA0A1B0GTK4 181 aa11.12□□□□□ -0.63
DDX41-216ENST00000513562 TOR1BO14657 336 aa11.12□□□□□ -0.63
DDX41-216ENST00000513562 HSF2BPO75031 334 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms