RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 USP8P40818 1118 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 CCNHP51946 323 aaPredicted RBP14.22□□□□□ -0.13
VARS-227ENST00000489979 ADKP55263 362 aaKnown RBP14.22□□□□□ -0.13
VARS-227ENST00000489979 PFN3P60673 137 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 SPIDRQ14159 915 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 LINC00303Q3SY05 128 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 PRRT3Q5FWE3 981 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 C6orf132Q5T0Z8 1188 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 KLHL10Q6JEL2 608 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 TTI2Q6NXR4 508 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 GJB7Q6PEY0 223 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 OLFML1Q6UWY5 402 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 TRIM59Q8IWR1 403 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 WDR48Q8TAF3 677 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 BTN2A2Q8WVV5 523 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 NAT6Q93015 286 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 C1QTNF2Q9BXJ5 285 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 CEP44Q9C0F1 390 aa14.22□□□□□ -0.13
VARS-227ENST00000489979 APOBEC3BQ9UH17 382 aaKnown RBP14.22□□□□□ -0.13
VARS-227ENST00000489979 ATXN7L1Q9ULK2 861 aaPredicted RBP14.22□□□□□ -0.13
VARS-227ENST00000489979 BECN2A8MW95 431 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 NTN3O00634 580 aaPredicted RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 ERBB2P04626 1255 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ANXA6P08133 673 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 TFE3P19532 575 aaPredicted RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 OR1E1P30953 314 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 CXCR3P49682 368 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 SERPINH1P50454 418 aaKnown RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 SLC6A3Q01959 620 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ARHGAP44Q17R89 818 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 CARD16Q5EG05 197 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 BRMS1LQ5PSV4 323 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 RETSATQ6NUM9 610 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 LRRC31Q6UY01 552 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ENOSF1Q7L5Y1 443 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 SLC26A9Q7LBE3 791 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ZSCAN30Q86W11 494 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 PHACTR4Q8IZ21 702 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 PCDH20Q8N6Y1 951 aaKnown RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 C1orf131Q8NDD1 294 aaKnown RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 NELFBQ8WX92 580 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 LRRC61Q9BV99 259 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ZDHHC6Q9H6R6 413 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 TMPRSS4Q9NRS4 437 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 GGT7Q9UJ14 662 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 PNMA8BQ9ULN7 279 aaPredicted RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 PADI4Q9UM07 663 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 FCF1Q9Y324 198 aaKnown RBP14.21□□□□□ -0.13
VARS-227ENST00000489979 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.21□□□□□ -0.13
VARS-227ENST00000489979 ATP6V1DQ9Y5K8 247 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 ACTL7AQ9Y615 435 aa14.21□□□□□ -0.13
VARS-227ENST00000489979 COL12A1Q99715 3063 aa14.21□□□□□ -0.14
VARS-227ENST00000489979 ILVBLA1L0T0 632 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 C16orf96A6NNT2 1141 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 LMO7DNF2Z398 122 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 NEMP1O14524 444 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 PLD2O14939 933 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 TSPAN6O43657 245 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ZMPSTE24O75844 475 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 GJB6O95452 261 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 SLC5A2P31639 672 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ABL2P42684 1182 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 SULT1E1P49888 294 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 THOP1P52888 689 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 RNASE9P60153 205 aaKnown RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 ARF5P84085 180 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 NFKB2Q00653 900 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 C1QBPQ07021 282 aaKnown RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 SLC20A2Q08357 652 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 SRSF6Q13247 344 aaKnown RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 PTK2BQ14289 1009 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 PTPN20Q4JDL3 420 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ESRP1Q6NXG1 681 aaKnown RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 USP53Q70EK8 1073 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 B3GNT8Q7Z7M8 397 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 JAMLQ86YT9 394 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 FBXO39Q8N4B4 442 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 DENND6BQ8NEG7 585 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ZNF397Q8NF99 534 aaPredicted RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 ASB12Q8WXK4 309 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 EXTL1Q92935 676 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 SGF29Q96ES7 293 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 LIN37Q96GY3 246 aaPredicted RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 NPY6RQ99463 290 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 SRRTQ9BXP5 876 aaKnown RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 SLC13A1Q9BZW2 595 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 CLPBQ9H078 707 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 EPB41L5Q9HCM4 733 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ATP13A1Q9HD20 1204 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 HECAQ9UBI9 543 aaPredicted RBP14.2□□□□□ -0.14
VARS-227ENST00000489979 MAN1B1Q9UKM7 699 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 PCDHGC3Q9UN70 934 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 ITM2BQ9Y287 266 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 PCDHGA7Q9Y5G6 932 aa14.2□□□□□ -0.14
VARS-227ENST00000489979 IGLV3-10A0A075B6K4 115 aa14.19□□□□□ -0.14
VARS-227ENST00000489979 PPP1R3GB7ZBB8 358 aa14.19□□□□□ -0.14
VARS-227ENST00000489979 TERTO14746 1132 aaKnown RBP14.19□□□□□ -0.14
VARS-227ENST00000489979 YY2O15391 372 aa14.19□□□□□ -0.14
VARS-227ENST00000489979 NOBOXO60393 691 aa14.19□□□□□ -0.14
VARS-227ENST00000489979 SRGAP2O75044 1071 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms