RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 HPS4Q9NQG7 708 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 EPS15L1Q9UBC2 864 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 CHMP2BQ9UQN3 213 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 SLC27A6Q9Y2P4 619 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 TTLL3Q9Y4R7 772 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 ACTL7AQ9Y615 435 aa11.65□□□□□ -0.54
C9orf3-220ENST00000489318 A0A087WUV0 522 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 LOC285095A0A1B0GVY8 99 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SDR42E2A6NKP2 422 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SYF2O95926 243 aaKnown RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 EPOP01588 193 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 C1QAP02745 245 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SHBGP04278 402 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 CISD3P0C7P0 127 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 PHBP35232 272 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 CD86P42081 329 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 RGRP47804 291 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 CSNK1DP48730 415 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 NPY2RP49146 381 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 WNT3AP56704 352 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SULT2A1Q06520 285 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 OLIG2Q13516 323 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SPARCL1Q14515 664 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 STAT4Q14765 748 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 TRIM68Q6AZZ1 485 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 LEKR1Q6ZMV7 388 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 CROCCP2Q86T23 111 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ADIPOR2Q86V24 386 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ANKMY2Q8IV38 441 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 MICALL1Q8N3F8 863 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 MPP5Q8N3R9 675 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 IPMKQ8NFU5 416 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 WFIKKN2Q8TEU8 576 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 TTC17Q96AE7 1141 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ISG20Q96AZ6 181 aaKnown RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 FEM1CQ96JP0 617 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 TRIB3Q96RU7 358 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 GAS2L1Q99501 681 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 FICDQ9BVA6 458 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ROPN1BQ9BZX4 212 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 IL22Q9GZX6 179 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ACSS3Q9H6R3 686 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 PPCSQ9HAB8 311 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ROPN1Q9HAT0 212 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 THG1LQ9NWX6 298 aaKnown RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 SYBUQ9NX95 663 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 EURLQ9NYK6 297 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 UBP1Q9NZI7 540 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 CD207Q9UJ71 328 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.64□□□□□ -0.55
C9orf3-220ENST00000489318 TICRRQ7Z2Z1 1910 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 REV3LO60673 3130 aa11.64□□□□□ -0.55
C9orf3-220ENST00000489318 ZNF106Q9H2Y7 1883 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ANHXE9PGG2 379 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ARNTLO00327 626 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 INSIG1O15503 277 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 OPA1O60313 960 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 USP12O75317 370 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ZNF821O75541 412 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 CPP00450 1065 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 SERPINF2P08697 491 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ATXN1LP0C7T5 689 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 SRCP12931 536 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ARSAP15289 507 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 PSMC3P17980 439 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 PGAM1P18669 254 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 HLA-DPA1P20036 260 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 MGAT1P26572 445 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 EIF2DP41214 584 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 AP1S1P61966 158 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 GPS2Q13227 327 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 MSLNQ13421 630 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 MTM1Q13496 603 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 FRG1Q14331 258 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 RASA2Q15283 850 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 PRPF38BQ5VTL8 546 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 GPR153Q6NV75 609 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ZNF449Q6P9G9 518 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 LINGO4Q6UY18 593 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 UNC5AQ6ZN44 842 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 CYS1Q717R9 158 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 MTSS1LQ765P7 747 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 C12orf40Q86WS4 652 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 PHTF2Q8N3S3 785 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 OR2W6PQ8NHA6 318 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 PTCD2Q8WV60 388 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 STAMBPL1Q96FJ0 436 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 NSMCE3Q96MG7 304 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 XPO6Q96QU8 1125 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 RUFY1Q96T51 708 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 FSD1LQ9BXM9 530 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 TDRD1Q9BXT4 1180 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 CEP44Q9C0F1 390 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ECT2Q9H8V3 914 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 MRM3Q9HC36 420 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 BFARQ9NZS9 450 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 ZC3H7BQ9UGR2 993 aaKnown RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 USP15Q9Y4E8 981 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-220ENST00000489318 SCN8AQ9UQD0 1980 aa11.63□□□□□ -0.55
C9orf3-220ENST00000489318 TRIOBPQ9H2D6 2365 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms