RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	ALOX15B	O15296	676 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	SIGLEC6	O43699	453 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	USP12	O75317	370 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	PCDH8	O95206	1070 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	LSM8	O95777	96 aa	Known RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	CHRNB2	P17787	502 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	SCNN1A	P37088	669 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	RECQL	P46063	649 aa	Predicted RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	RXRG	P48443	463 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	CSRP3	P50461	194 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	E2F1	Q01094	437 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	KRT31	Q15323	416 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	PROX2	Q3B8N5	592 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	SETMAR	Q53H47	684 aa	Predicted RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	ARTN	Q5T4W7	220 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	SMYD5	Q6GMV2	418 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	C22orf39	Q6P5X5	142 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	LEKR1	Q6ZMV7	388 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	DPY19L3	Q6ZPD9	716 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	TRIM69	Q86WT6	500 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	DCAF4L2	Q8NA75	395 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	TMIE	Q8NEW7	156 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	JOSD2	Q8TAC2	188 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	ENOX1	Q8TC92	643 aa	Known RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	RXFP2	Q8WXD0	754 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	KLHDC7B	Q96G42	594 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	VCPIP1	Q96JH7	1222 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	CCDC114	Q96M63	670 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	HAPLN3	Q96S86	360 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	C11orf70	Q9BRQ4	267 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	ZYG11B	Q9C0D3	744 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	GAN	Q9H2C0	597 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	ATP13A1	Q9HD20	1204 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	DYRK4	Q9NR20	520 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	LMBRD1	Q9NUN5	540 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	IL36A	Q9UHA7	158 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	IL17B	Q9UHF5	180 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	TPX2	Q9ULW0	747 aa	Known RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	DMTF1	Q9Y222	760 aa		10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	FCF1	Q9Y324	198 aa	Known RBP	10.79	□□□□□ -0.68
HMGN1-215	ENST00000485550	IGLV3-10	A0A075B6K4	115 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ILVBL	A1L0T0	632 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	MAGEC1	O60732	1142 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ZNF821	O75541	412 aa	Predicted RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	LEFTY1	O75610	366 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ZMPSTE24	O75844	475 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	PRNP	P04156	253 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	CYP1A1	P04798	512 aa	Predicted RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	THEGL	P0DJG4	465 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	GK	P32189	559 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	SOX5	P35711	763 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ACVRL1	P37023	503 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	CLDN2	P57739	230 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	FMO1	Q01740	532 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	NFATC3	Q12968	1075 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	CCDC14	Q49A88	953 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	COLEC12	Q5KU26	742 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	SEL1L3	Q68CR1	1132 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	RWDD4	Q6NW29	188 aa	Known RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ERN2	Q76MJ5	926 aa	Known RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	TMC6	Q7Z403	805 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	BNIPL	Q7Z465	357 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	HORMAD1	Q86X24	394 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	OXR1	Q8N573	874 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	GPT2	Q8TD30	523 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	PCDHB18P	Q96TA0	734 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	PREB	Q9HCU5	417 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	NDFIP2	Q9NV92	336 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	FANCL	Q9NW38	375 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ZNF212	Q9UDV6	495 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	OR12D3	Q9UGF7	316 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	DNAI1	Q9UI46	699 aa		10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	NOCT	Q9UK39	431 aa	Known RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	ZFR2	Q9UPR6	939 aa	Known RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	HEMK1	Q9Y5R4	338 aa	Predicted RBP	10.78	□□□□□ -0.68
HMGN1-215	ENST00000485550	NBAS	A2RRP1	2371 aa		10.77	□□□□□ -0.68
HMGN1-215	ENST00000485550	BOD1L1	Q8NFC6	3051 aa		10.77	□□□□□ -0.68
HMGN1-215	ENST00000485550	TLN1	Q9Y490	2541 aa	Known RBP	10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	FAM72C	H0Y354	149 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	CS	O75390	466 aa	Known RBP	10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	TPM2	P07951	284 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	MYF5	P13349	255 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	MMP8	P22894	467 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	SDC4	P31431	198 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	AKT2	P31751	481 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	ADRA1B	P35368	520 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	NUDT1	P36639	197 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	ARF5	P84085	180 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	NFKB2	Q00653	900 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	CDR2	Q01850	454 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	GNA12	Q03113	381 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	CCDC15	Q0P6D6	951 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	SYCP1	Q15431	976 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	ZNF284	Q2VY69	593 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	ARL13B	Q3SXY8	428 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	ZNF542P	Q5EBM4	170 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	CARD16	Q5EG05	197 aa		10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	CT47A1	Q5JQC4	288 aa	Predicted RBP	10.77	□□□□□ -0.69
HMGN1-215	ENST00000485550	C6orf132	Q5T0Z8	1188 aa		10.77	□□□□□ -0.69

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