RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RAMP2O60895 175 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 C1SP09871 688 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 ZNF143P52747 638 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 RPL7AP62424 266 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 KIAA1161Q6NSJ0 714 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 LEKR1Q6ZMV7 388 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 AOPEPQ8N6M6 819 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 MCEEQ96PE7 176 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 CALN1Q9BXU9 219 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 GPR27Q9NS67 375 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 SEPT11Q9NVA2 429 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 UCKL1Q9NWZ5 548 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 LHX6Q9UPM6 363 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 RAXQ9Y2V3 346 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 URB1O60287 2271 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 LRRK1Q38SD2 2015 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 SPINT1O43278 529 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 GSRP00390 522 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 DGKAP23743 735 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 ABL2P42684 1182 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 GEMIN4P57678 1058 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 RPS21P63220 83 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 CYP4F3Q08477 520 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 POLD3Q15054 466 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 CCDC183Q5T5S1 534 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 DNAJC24Q6P3W2 148 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 FBXL19Q6PCT2 694 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 SLFN11Q7Z7L1 901 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 PDCD7Q8N8D1 485 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 OR2AP1Q8NGE2 309 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 BAP1Q92560 729 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 SYT11Q9BT88 431 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 SLC17A9Q9BYT1 436 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 KLHL11Q9NVR0 708 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 CFAP46Q8IYW2 2715 aa19.11■□□□□ 0.65
CCDC88B-206ENST00000473405 ATMQ13315 3056 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 MGAQ8IWI9 3026 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 RAD51BO15315 384 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 SIGLEC6O43699 453 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 GIMD1P0DJR0 217 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 CDK4P11802 303 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 CKMT2P17540 419 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 CDK11BP21127 795 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 TYRO3Q06418 890 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 RTL3Q8N8U3 475 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 BMFQ96LC9 184 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 KLC2Q9H0B6 622 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 GGT7Q9UJ14 662 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 HPCAL4Q9UM19 191 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 ITM2BQ9Y287 266 aa19.1■□□□□ 0.65
CCDC88B-206ENST00000473405 POM121BA6NF01 834 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 C16orf96A6NNT2 1141 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 A6NNZ2 444 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 GOLGA6L22H0YM25 854 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 KRIT1O00522 736 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 KDELR3O43731 214 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 MBD3O95983 291 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ACP1P24666 158 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 EPHB2P29323 1055 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 HNF1BP35680 557 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 OGDHQ02218 1023 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 MAPK8IP2Q13387 824 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ZNF211Q13398 564 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ILKQ13418 452 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ZNF805Q5CZA5 627 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 EFHC2Q5JST6 749 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ATXN7L2Q5T6C5 722 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 HES3Q5TGS1 186 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 KYAT3Q6YP21 454 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 Q6ZSR6 202 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 IRF2BP2Q7Z5L9 587 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 PTAR1Q7Z6K3 402 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 MCOLN2Q8IZK6 566 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 RYBPQ8N488 228 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 OR4C6Q8NH72 309 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 LRIG1Q96JA1 1093 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 FEM1CQ96JP0 617 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 KLF6Q99612 283 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 CNPY3Q9BT09 278 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 C1QTNF2Q9BXJ5 285 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 TAS2R14Q9NYV8 317 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 FZD10Q9ULW2 581 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 HS3ST3A1Q9Y663 406 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 ANKRD36A6QL64 1941 aa19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 FASNP49327 2511 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-206ENST00000473405 COL27A1Q8IZC6 1860 aaPredicted RBP19.08■□□□□ 0.65
CCDC88B-206ENST00000473405 TEX33O43247 280 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 PIAS2O75928 621 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 TMCC1O94876 653 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 PAK4O96013 591 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 UGT2B4P06133 528 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 FERP16591 822 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 SNRPD1P62314 119 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 SCYL2Q6P3W7 929 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 C19orf48Q6RUI8 117 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 KDM7AQ6ZMT4 941 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 RAB7BQ96AH8 199 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 IFT43Q96FT9 208 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 TMEM63CQ9P1W3 806 aa19.08■□□□□ 0.64
CCDC88B-206ENST00000473405 ZSCAN5CA6NGD5 496 aaPredicted RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms