RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 FAM174AQ8TBP5 190 aa21.43■■□□□ 1.02
COL9A3-207ENST00000467819 ARHGEF2Q92974 986 aaKnown RBP21.43■■□□□ 1.02
COL9A3-207ENST00000467819 IFT43Q96FT9 208 aa21.43■■□□□ 1.02
COL9A3-207ENST00000467819 NLGN3Q9NZ94 848 aa21.43■■□□□ 1.02
COL9A3-207ENST00000467819 ITM2BQ9Y287 266 aa21.43■■□□□ 1.02
COL9A3-207ENST00000467819 C2CD4BA6NLJ0 364 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 C16orf96A6NNT2 1141 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 NEMP1O14524 444 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 EPHB6O15197 1021 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 AP1G1O43747 822 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 CKMT1AP12532 417 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 SOX5P35711 763 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 ABL2P42684 1182 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 MAPKAPK2P49137 400 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 FZD2Q14332 565 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 POLD3Q15054 466 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-207ENST00000467819 KRT31Q15323 416 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 CT47A1Q5JQC4 288 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-207ENST00000467819 CACTIN-AS1Q8N1I8 211 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 CCDC185Q8N715 623 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 ISG20Q96AZ6 181 aaKnown RBP21.42■■□□□ 1.02
COL9A3-207ENST00000467819 TBC1D31Q96DN5 1066 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 APOLD1Q96LR9 279 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 OSBPL2Q9H1P3 480 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 GPR27Q9NS67 375 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 TMEM248Q9NWD8 314 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 GGT7Q9UJ14 662 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 HPCAL4Q9UM19 191 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 NEU3Q9UQ49 428 aa21.42■■□□□ 1.02
COL9A3-207ENST00000467819 LRRK1Q38SD2 2015 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 NEMP2A6NFY4 417 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 IGLON5A6NGN9 336 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 EIF4E1BA6NMX2 242 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 KRIT1O00522 736 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 RRP8O43159 456 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 LRIG2O94898 1065 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 TPM2P07951 284 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 PTPN9P43378 593 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 JAM2P57087 298 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 HNRNPKP61978 463 aaKnown RBP eCLIP21.41■■□□□ 1.021e-6■■■■□ 21.6
COL9A3-207ENST00000467819 SGCGQ13326 291 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 FKBP15Q5T1M5 1219 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 STRADAQ7RTN6 431 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 ZNF354CQ86Y25 554 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 OR2AP1Q8NGE2 309 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 SNIP1Q8TAD8 396 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 ENOX1Q8TC92 643 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 FAM172AQ8WUF8 416 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 BAP1Q92560 729 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 MAGEH1Q9H213 219 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 IPO11Q9UI26 975 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 PCDHB1Q9Y5F3 818 aa21.41■■□□□ 1.02
COL9A3-207ENST00000467819 GCN1Q92616 2671 aaKnown RBP21.41■■□□□ 1.02
COL9A3-207ENST00000467819 SPTY2D1-AS1A0A0U1RR47 76 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 K7ESM1 405 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 FPGTO14772 594 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 SCAMP1O15126 338 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 OPA1O60313 960 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 RAMP2O60895 175 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 UGT2B4P06133 528 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 PLEKP08567 350 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 RABIFP47224 123 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 HDAC4P56524 1084 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 GEMIN4P57678 1058 aaKnown RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 SNRPD1P62314 119 aaKnown RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 PDE1CQ14123 709 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 ZNF805Q5CZA5 627 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 CDKAL1Q5VV42 579 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 TRIM72Q6ZMU5 477 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 PARGQ86W56 976 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 PLPP6Q8IY26 295 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 ZNF548Q8NEK5 533 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 RAB7BQ96AH8 199 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 KLF6Q99612 283 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-207ENST00000467819 C1QTNF2Q9BXJ5 285 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 RP1P56715 2156 aa21.4■■□□□ 1.02
COL9A3-207ENST00000467819 LY6G6EA0A0G2JKS1 128 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 H3BM21 787 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 TSPAN6O43657 245 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 GSRP00390 522 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 CSF2P04141 144 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 KRT3P12035 628 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 ACTN2P35609 894 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 STAT1P42224 750 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 NSFP46459 744 aaKnown RBP21.39■■□□□ 1.01
COL9A3-207ENST00000467819 PTP4A2Q12974 167 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 LRRC73Q5JTD7 316 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 TPRG1LQ5T0D9 272 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 ATXN7L2Q5T6C5 722 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-207ENST00000467819 ZSCAN30Q86W11 494 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 CENPIQ92674 756 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-207ENST00000467819 FGF11Q92914 225 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 PCMTD1Q96MG8 357 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-207ENST00000467819 KLHL32Q96NJ5 620 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 LENG8Q96PV6 779 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-207ENST00000467819 PCDHB18PQ96TA0 734 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 DUSP23Q9BVJ7 150 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 SELENOOQ9BVL4 669 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 RETREG1Q9H6L5 497 aa21.39■■□□□ 1.01
COL9A3-207ENST00000467819 ADAM22Q9P0K1 906 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms