RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 VPS4BO75351 444 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ZBTB11O95625 1053 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 AKAP5P24588 427 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RPL9P32969 192 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ASPAP45381 313 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RGS7P49802 495 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SERPINH1P50454 418 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 CCR3P51677 355 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 NME5P56597 212 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ACTR3P61158 418 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ADAM17P78536 824 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ITGA7Q13683 1181 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 HABP4Q5JVS0 413 aaKnown RBP6.27□□□□□ -1.41
VPS13D-202ENST00000460333 KLHDC10Q6PID8 442 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 LCLAT1Q6UWP7 414 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 CXCL17Q6UXB2 119 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 LINC00523Q86TU6 105 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 TOP6BLQ8N6T0 577 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 SEZ6LQ9BYH1 1024 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 BCO2Q9BYV7 579 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 PRDM16Q9HAZ2 1276 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 RAPGEFL1Q9UHV5 662 aa6.27□□□□□ -1.41
VPS13D-202ENST00000460333 ZBTB42B2RXF5 422 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PEX1O43933 1283 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ERBB2P04626 1255 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ZNF865P0CJ78 1059 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 LCP1P13796 627 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 IDO1P14902 403 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 DDX5P17844 614 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TGM2P21980 687 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GRIK1P39086 918 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CCNFP41002 786 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ELK3P41970 407 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ALDH7A1P49419 539 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MCCD1P59942 119 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TNK2Q07912 1038 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NFYCQ13952 458 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 C2CD6Q53TS8 623 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 C9orf57Q5W0N0 161 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MZT2BQ6NZ67 158 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 HDDC2Q7Z4H3 204 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TTC7BQ86TV6 843 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 BBS7Q8IWZ6 715 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PEX5LQ8IYB4 626 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 FAM9CQ8IZT9 166 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 EID3Q8N140 333 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 AADATQ8N5Z0 425 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RBM15BQ8NDT2 890 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 HSFY1Q96LI6 401 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 UROC1Q96N76 676 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PTPN18Q99952 460 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 C6orf62Q9GZU0 229 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 EBF3Q9H4W6 596 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 LRRC40Q9H9A6 602 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLC28A3Q9HAS3 691 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CCNB1IP1Q9NPC3 277 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 SLCO1B3Q9NPD5 702 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CCDC59Q9P031 241 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ADAM28Q9UKQ2 775 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 WBP11Q9Y2W2 641 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PCDHB12Q9Y5F1 795 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 FAM20BO75063 409 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RHOBTB1O94844 696 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 AMHP03971 560 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RBP1P09455 135 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 HOXD8P13378 290 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GP5P40197 560 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RXRGP48443 463 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ITGA1P56199 1179 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GJA9P57773 515 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 BST1Q10588 318 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 AGKQ53H12 422 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ACSBG2Q5FVE4 666 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PDZK1Q5T2W1 519 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 RBM20Q5T481 1227 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TRIQKQ629K1 86 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 LPCAT4Q643R3 524 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 TMEM126BQ8IUX1 230 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CENPLQ8N0S6 344 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GSTCDQ8NEC7 633 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GANCQ8TET4 914 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 C10orf82Q8WW14 230 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ALG3Q92685 438 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PROX1Q92786 737 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ULK4Q96C45 1275 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 NSMCE2Q96MF7 247 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 CPNE1Q99829 537 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 EHD1Q9H4M9 534 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 DNAJC28Q9NX36 388 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.26□□□□□ -1.414e-7■■■□□ 15
VPS13D-202ENST00000460333 KANSL3Q9P2N6 904 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ANAPC2Q9UJX6 822 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 GNEQ9Y223 722 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 EFR3BQ9Y2G0 817 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MYO1GB0I1T2 1018 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 MYO1DO94832 1006 aa6.26□□□□□ -1.41
VPS13D-202ENST00000460333 S100A9P06702 114 aaKnown RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 PORP16435 677 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-202ENST00000460333 ADSLP30566 484 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms