RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 SLC41A1Q8IVJ1 513 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 PPM1KQ8N3J5 372 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 TXNDC5Q8NBS9 432 aaKnown RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 APPL2Q8NEU8 664 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 BEST2Q8NFU1 509 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 CYB5D2Q8WUJ1 264 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 SHC3Q92529 594 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 SYN2Q92777 582 aaPredicted RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 IQCDQ96DY2 449 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 CCDC120Q96HB5 630 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 NAF1Q96HR8 494 aaKnown RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 HPDLQ96IR7 371 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 SPAG5Q96R06 1193 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 BAG1Q99933 345 aaPredicted RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 SEMA3CQ99985 751 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 ZSWIM1Q9BR11 485 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 SYT11Q9BT88 431 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 ACP6Q9NPH0 428 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 TDP1Q9NUW8 608 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 VTI1BQ9UEU0 232 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 PLEKHB1Q9UF11 243 aaPredicted RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 ITGA11Q9UKX5 1188 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 UBQLN1Q9UMX0 589 aaKnown RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 NENFQ9UMX5 172 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 AGAP1Q9UPQ3 857 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 ZKSCAN5Q9Y2L8 839 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 REXO2Q9Y3B8 237 aaKnown RBP4.99□□□□□ -1.61
PTPN4-206ENST00000441089 KCTD3Q9Y597 815 aa4.99□□□□□ -1.61
PTPN4-206ENST00000441089 IGHV1OR15-9A0A0B4J2B8 117 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 USP27XA6NNY8 438 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 MEI4A8MW99 385 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 I3L4J1 428 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 SGK1O00141 431 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DDX3XO00571 662 aaKnown RBP eCLIP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 PODXLO00592 558 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HCRTO43612 131 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 PCDHGA12O60330 932 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 KLF8O95600 359 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 PF4P02776 101 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TPM1P09493 284 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 KRT10P13645 584 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HNRNPLP14866 589 aaKnown RBP eCLIP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 CHRNB2P17787 502 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DDX6P26196 483 aaKnown RBP eCLIP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TNFRSF8P28908 595 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ATICP31939 592 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 EIF4A3P38919 411 aaKnown RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 PRKCIP41743 596 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 STAT1P42224 750 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 IFNAR2P48551 515 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 CLCNKBP51801 687 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ZNF132P52740 706 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 MFAP3P55082 362 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 CDH8P55286 799 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ERVPABLB-1P60509 514 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 CDK17Q00537 523 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ARID5AQ03989 594 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ZNF268Q14587 947 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 VEPH1Q14D04 833 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ASIC2Q16515 512 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 UPP1Q16831 310 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 KIF26BQ2KJY2 2108 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 SGSM1Q2NKQ1 1148 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 WDR72Q3MJ13 1102 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ZNF667Q5HYK9 610 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HES3Q5TGS1 186 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 NAIF1Q69YI7 327 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 BNC2Q6ZN30 1099 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TRMT11Q7Z4G4 463 aaKnown RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 NOP9Q86U38 636 aaKnown RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 OSTM1Q86WC4 334 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DNAAF5Q86Y56 855 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 CREG2Q8IUH2 290 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 RELL1Q8IUW5 271 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 FAM71AQ8IYT1 594 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ALLCQ8N6M5 410 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 LRRC52Q8N7C0 313 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 IL17RCQ8NAC3 791 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ACRBPQ8NEB7 543 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 KIAA1524Q8TCG1 905 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 SLC20A1Q8WUM9 679 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 KBTBD7Q8WVZ9 684 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DNASE2BQ8WZ79 361 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TAF4BQ92750 862 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HIC2Q96JB3 615 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TMEM74Q96NL1 305 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TWNKQ96RR1 684 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 TSPAN18Q96SJ8 248 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 MRPL45Q9BRJ2 306 aaKnown RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DESI2Q9BSY9 194 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 SLC46A2Q9BY10 475 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 ELOVL4Q9GZR5 314 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HAUS4Q9H6D7 363 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 NHEJ1Q9H9Q4 299 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 IL21RQ9HBE5 538 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 SPTLC3Q9NUV7 552 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 DUS2Q9NX74 493 aaKnown RBP4.98□□□□□ -1.61
PTPN4-206ENST00000441089 GMIPQ9P107 970 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 HMGXB4Q9UGU5 601 aa4.98□□□□□ -1.61
PTPN4-206ENST00000441089 NOCTQ9UK39 431 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms