RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 FUOMA2VDF0 154 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 MATN2O00339 956 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 PLOD2O00469 737 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SLC22A2O15244 555 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 FOXD2O60548 495 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 CSPG5O95196 566 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 C8BP07358 591 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 RAP1GAPP47736 663 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 ORC1Q13415 861 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 NAB1Q13506 487 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 ZBED5Q49AG3 693 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 KCTD21Q4G0X4 260 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SLC9A4Q6AI14 798 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 RWDD4Q6NW29 188 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 LRRC8DQ7L1W4 858 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 PLD6Q8N2A8 252 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 CPSF7Q8N684 471 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 RXFP2Q8WXD0 754 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 LRTOMTQ8WZ04 291 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 EFCAB1Q9HAE3 211 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 PRDM16Q9HAZ2 1276 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 MTMR10Q9NXD2 777 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 TTC3P53804 2025 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 PDCD11Q14690 1871 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 PSMD12O00232 456 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 SOX1O00570 391 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 TRIM38O00635 465 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 GPR32O75388 356 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 VAPBO95292 243 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 ALDH2P05091 517 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 FGFR3P22607 806 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 MPSTP25325 297 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 IGBP1P78318 339 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 CTBSQ01459 385 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 FPGSQ05932 587 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 RFTN1Q14699 578 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 HERC3Q15034 1050 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SHHQ15465 462 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 CCDC92Q53HC0 331 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 ZNF484Q5JVG2 852 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 TRNP1Q6NT89 227 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SCYL2Q6P3W7 929 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 CMC1Q7Z7K0 106 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 TMEM40Q8WWA1 233 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 TMA16Q96EY4 203 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 SLC29A1Q99808 456 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 ILKAPQ9H0C8 392 aaPredicted RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 PDZD7Q9H5P4 517 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SLC38A7Q9NVC3 462 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 NXF1Q9UBU9 619 aaKnown RBP8.68□□□□□ -1.02
HPS4-206ENST00000439453 CDH7Q9ULB5 785 aa8.68□□□□□ -1.02
HPS4-206ENST00000439453 SMIM35A0A1B0GVV1 85 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 TMEM247A6NEH6 219 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 G3V2L1 256 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ZNF701M0R085 212 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 FBP2O00757 339 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 OCM2P0CE71 109 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 OCMP0CE72 109 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 ACRP10323 421 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 SELPP16109 830 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 PDGFRAP16234 1089 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ZNF12P17014 697 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 GARSP41250 739 aaKnown RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 NAMPTP43490 491 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 SEMA5AQ13591 1074 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 DUOXA2Q1HG44 320 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ZNF829Q3KNS6 432 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 DCDC5Q6ZRR9 648 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 PTAR1Q7Z6K3 402 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 DNAJB3Q8WWF6 145 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ZNF385DQ9H6B1 395 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 IL23AQ9NPF7 189 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 SNX15Q9NRS6 342 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 TXNDC16Q9P2K2 825 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 RRN3P2A6NIE6 340 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 C2CD4BA6NLJ0 364 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 KPNA7A9QM74 516 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 F5H423 210 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 HDAC3O15379 428 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 TRIM13O60858 407 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 CHRNGP07510 517 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 HOXD12P35452 270 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 HALP42357 657 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ZBTB33Q86T24 672 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 SREK1Q8WXA9 508 aaKnown RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 THAP11Q96EK4 314 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 CORO1BQ9BR76 489 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 CXXC1Q9P0U4 656 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 TRIOBPQ9H2D6 2365 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 A0A087WXM4 84 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 HTRA2O43464 458 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 E2F6O75461 281 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 TADA2AO75478 443 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 MICAL2O94851 1124 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 MCF2P10911 925 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 MGAT1P26572 445 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ADSLP30566 484 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 CD151P48509 253 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 BCAP31P51572 246 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 C21orf59P57076 290 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms