RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 IDH3AP50213 366 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 PLK1P53350 603 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 NAGLUP54802 743 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 USP10Q14694 798 aaKnown RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 MGAT5BQ3V5L5 792 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 RTP2Q5QGT7 225 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 TMEM198Q66K66 360 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 STEAP4Q687X5 459 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 MARK2Q7KZI7 788 aaKnown RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 TMEM135Q86UB9 458 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SLC41A1Q8IVJ1 513 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SH3RF2Q8TEC5 729 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 PABPC5Q96DU9 382 aaKnown RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 VPS39Q96JC1 886 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 FICDQ9BVA6 458 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 CCDC106Q9BWC9 280 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 COG4Q9H9E3 785 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 ETAA1Q9NY74 926 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 RUVBL2Q9Y230 463 aaKnown RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 APOBEC2Q9Y235 224 aaKnown RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 J3KR12 359 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 PITPNM1O00562 1244 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 TRAFD1O14545 582 aaPredicted RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 SIN3BO75182 1162 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 CNTN5O94779 1100 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 EOMESO95936 686 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 MT-CO1P00395 513 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SKIP12755 728 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 MLNP12872 115 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 RAG1P15918 1043 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SLC11A1P49279 550 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 DEFB103AP81534 67 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 TCHHL1Q5QJ38 904 aaPredicted RBP9.61□□□□□ -0.87
CUX1-206ENST00000437600 SNX30Q5VWJ9 437 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 KCTD11Q693B1 232 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SCD5Q86SK9 330 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 CEP97Q8IW35 865 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 CCNYL1Q8N7R7 359 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 ZNF398Q8TD17 642 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 GIPC2Q8TF65 315 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 OR52B2Q96RD2 323 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 RBBP8Q99708 897 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 WWP1Q9H0M0 922 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 DCDC2Q9UHG0 476 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 SLC7A8Q9UHI5 535 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 LNPEPQ9UIQ6 1025 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 ADAM28Q9UKQ2 775 aa9.61□□□□□ -0.87
CUX1-206ENST00000437600 FNDC1Q4ZHG4 1894 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 KLF11O14901 512 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 GLRA3O75311 464 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 HSPA4LO95757 839 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 RPLP2P05387 115 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 ZRSR2Q15696 482 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 MFSD4BQ5TF39 518 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 C4orf22Q6V702 233 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 MFSD6LQ8IWD5 586 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 BCL7CQ8WUZ0 217 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 PYDC1Q8WXC3 89 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 NAF1Q96HR8 494 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 DDX50Q9BQ39 737 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 CYP4F12Q9HCS2 524 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 RCOR3Q9P2K3 495 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 A0A0U1RQS6 177 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 OR51F1A6NGY5 319 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 ZNF487B1APH4 448 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 G3V2L1 256 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 ADAM12O43184 909 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 ZBTB14O43829 449 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 MPSTP25325 297 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 SPRP35270 261 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 PAPOLAP51003 745 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 ABCE1P61221 599 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 DUSP4Q13115 394 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 TUBB3Q13509 450 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 IHHQ14623 411 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 FBXO48Q5FWF7 155 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 PPM1LQ5SGD2 360 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 THEMIS2Q5TEJ8 643 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 KYAT3Q6YP21 454 aaKnown RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 PDZD4Q76G19 769 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 UCMAQ8WVF2 138 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 NXNL1Q96CM4 212 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 PANX3Q96QZ0 392 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 CYP2S1Q96SQ9 504 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 CPNE1Q99829 537 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 GATA5Q9BWX5 397 aaPredicted RBP9.6□□□□□ -0.87
CUX1-206ENST00000437600 NUF2Q9BZD4 464 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 GBA3Q9H227 469 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 NMRAL1Q9HBL8 299 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 CASS4Q9NQ75 786 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 TMEM161AQ9NX61 479 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 GMIPQ9P107 970 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 DSEQ9UL01 958 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 PCDHB8Q9UN66 801 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 ZNF232Q9UNY5 417 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 KCTD3Q9Y597 815 aa9.6□□□□□ -0.87
CUX1-206ENST00000437600 VWA8A3KMH1 1905 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 SPECC1L-ADORA2AF8WAN1 911 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TNFRSF10BO14763 440 aa9.59□□□□□ -0.87
CUX1-206ENST00000437600 TPD52L2O43399 206 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms