RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 CD69Q07108 199 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 TUBB3Q13509 450 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ALCAMQ13740 583 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 KCNJ12Q14500 433 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 PDK1Q15118 436 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SMN1Q16637 294 aaKnown RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 HYAL4Q2M3T9 481 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 PROSER3Q2NL68 480 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 LRRC23Q53EV4 343 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 TDRD12Q587J7 1177 aaKnown RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 DCAF12L1Q5VU92 463 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SHEQ5VZ18 495 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CENPPQ6IPU0 288 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 DENND1BQ6P3S1 775 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 MTHFD1LQ6UB35 978 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CRELD2Q6UXH1 353 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ZYG11AQ6WRX3 759 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 LDLRAD3Q86YD5 345 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 RFX6Q8HWS3 928 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CNTN4Q8IWV2 1026 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CCDC13Q8IYE1 715 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 VPS52Q8N1B4 723 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SUPT20HQ8NEM7 779 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SUN5Q8TC36 379 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 BCAS4Q8TDM0 211 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 LARP4BQ92615 738 aaKnown RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 HOXB13Q92826 284 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CORO2AQ92828 525 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 TNPO1Q92973 898 aaKnown RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 RAB24Q969Q5 203 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 RAB7BQ96AH8 199 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 FAM149B1Q96BN6 582 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 GRAMD1AQ96CP6 724 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SAT2Q96F10 170 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 EEF2KMTQ96G04 330 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 EPSTI1Q96J88 318 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 NLRP4Q96MN2 994 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ZNF396Q96N95 335 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 DGAT2Q96PD7 388 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 PIP5K1AQ99755 562 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 LZTS2Q9BRK4 669 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 HEMGNQ9BXL5 484 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 PACSIN1Q9BY11 444 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 GPR87Q9BY21 358 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 GCOM2Q9BZD3 368 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 LRRCC1Q9C099 1032 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ISCUQ9H1K1 167 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 IKZF4Q9H2S9 585 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ST6GALNAC4Q9H4F1 302 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 IL21RQ9HBE5 538 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CRLF2Q9HC73 371 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SLC2A4RGQ9NR83 387 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 SPATS2LQ9NUQ6 558 aaKnown RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 ING3Q9NXR8 418 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 C11orf21Q9P2W6 132 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 FETUBQ9UGM5 382 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 FBXO40Q9UH90 709 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 AMACRQ9UHK6 382 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 FAM153AQ9UHL3 310 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CDH22Q9UJ99 828 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CDH7Q9ULB5 785 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CNTN6Q9UQ52 1028 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 RPH3AQ9Y2J0 694 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-205ENST00000424674 PCDHGA1Q9Y5H4 931 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 N6AMT1Q9Y5N5 214 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 CLCA3PQ9Y6N3 262 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 MROH5Q6ZUA9 1318 aa3.83□□□□□ -1.8
SF3B1-205ENST00000424674 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.82□□□□□ -1.8
SF3B1-205ENST00000424674 AOX1Q06278 1338 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 ADGRF5Q8IZF2 1346 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 RPTORQ8N122 1335 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 LOC100509620A0A075B734 347 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 A0A087WWL8 130 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 A0A087X1B8 175 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 FRMD3A2A2Y4 597 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 AQP7P3A6NL99 342 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CDRT15L2A8MXV6 281 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 RAB27BO00194 218 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 F2RL2O00254 374 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 SLC33A1O00400 549 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-205ENST00000424674 GRM6O15303 877 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CA12O43570 354 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CCNT2O60583 730 aaKnown RBP3.82□□□□□ -1.8
SF3B1-205ENST00000424674 IPO13O94829 963 aaKnown RBP3.82□□□□□ -1.8
SF3B1-205ENST00000424674 LARGE1O95461 756 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 C22orf31O95567 290 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 PLGP00747 810 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-205ENST00000424674 RB1P06400 928 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 ASGR1P07306 291 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 WEE2P0C1S8 567 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 SELLP14151 372 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CSF2RAP15509 400 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 TPH1P17752 444 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 KHKP50053 298 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CPT1AP50416 773 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CDH15P55291 814 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CHIT1Q13231 466 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 ATP1A4Q13733 1029 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 CBFBQ13951 182 aa3.82□□□□□ -1.8
SF3B1-205ENST00000424674 TOB2Q14106 344 aaPredicted RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms