RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TBX2Q13207 712 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 TAF1BQ53T94 588 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 C2CD6Q53TS8 623 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 PERM1Q5SV97 790 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 TTC39BQ5VTQ0 682 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 TRNP1Q6NT89 227 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 C22orf39Q6P5X5 142 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 ABI3BPQ7Z7G0 1075 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 RBFAQ8N0V3 343 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF248Q8NDW4 579 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF548Q8NEK5 533 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 OR6K2Q8NGY2 324 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 IFI44Q8TCB0 444 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 VOPP1Q96AW1 172 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 ATXN7L3BQ96GX2 97 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 PPP1R13BQ96KQ4 1090 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 GPR27Q9NS67 375 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 TPX2Q9ULW0 747 aaKnown RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 CAPN11Q9UMQ6 739 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 SATB2Q9UPW6 733 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 CPED1A4D0V7 1026 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 FOXN3O00409 490 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 MED7O43513 233 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 MAGEC1O60732 1142 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 HSF2BPO75031 334 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 TPM1P09493 284 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 AKT2P31751 481 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 CDH4P55283 916 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 JAM2P57087 298 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 RNASE9P60153 205 aaKnown RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 TCEA2Q15560 299 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 DEFB133Q30KQ1 61 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 C5orf22Q49AR2 442 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 LRRC73Q5JTD7 316 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 ERN2Q76MJ5 926 aaKnown RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 DRC7Q8IY82 874 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 NETO2Q8NC67 525 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF397Q8NF99 534 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 MAPK15Q8TD08 544 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 CPLX3Q8WVH0 158 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 KCNE4Q8WWG9 221 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 SHC3Q92529 594 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 TTC9Q92623 222 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 ANP32BQ92688 251 aaKnown RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 PRR11Q96HE9 360 aaPredicted RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 TKTL2Q9H0I9 626 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 NLRC4Q9NPP4 1024 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 NLGN3Q9NZ94 848 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 IMPACTQ9P2X3 320 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 SLC12A6Q9UHW9 1150 aa13.16□□□□□ -0.3
LINC00339-202ENST00000416769 FCF1Q9Y324 198 aaKnown RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 LUC7L2Q9Y383 392 aaKnown RBP13.16□□□□□ -0.3
LINC00339-202ENST00000416769 SCAMP1O15126 338 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 CLDN11O75508 207 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 PAK4O96013 591 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 GYPCP04921 128 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 CELA2BP08218 269 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 SLC2A3P11169 496 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 CASP14P31944 242 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 NUDT1P36639 197 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 STAT1P42224 750 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ABL2P42684 1182 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 LSSP48449 732 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 PDX1P52945 283 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ZBED6P86452 979 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 EIF2B5Q13144 721 aaKnown RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 SRSF6Q13247 344 aaKnown RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 C1orf61Q13536 156 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 RAPGEF1Q13905 1077 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ISXQ2M1V0 245 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 FOXR1Q6PIV2 292 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 PARS2Q7L3T8 475 aaKnown RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 EFL1Q7Z2Z2 1120 aaKnown RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 SLC47A2Q86VL8 602 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 FAM71AQ8IYT1 594 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 TMIEQ8NEW7 156 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF578Q96N58 590 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 DEPDC7Q96QD5 511 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 TBCBQ99426 244 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 NPY6RQ99463 290 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 KLF6Q99612 283 aaPredicted RBP13.15□□□□□ -0.3
LINC00339-202ENST00000416769 SPON2Q9BUD6 331 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 TRIM62Q9BVG3 475 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 MAGEB5Q9BZ81 275 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 POLR1BQ9H9Y6 1135 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ASNSD1Q9NWL6 643 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ARHGEF38Q9NXL2 777 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF212Q9UDV6 495 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 IL36AQ9UHA7 158 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 FADS3Q9Y5Q0 445 aa13.15□□□□□ -0.3
LINC00339-202ENST00000416769 A6NNZ2 444 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 J3QKU1 62 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 ERVH48-1M5A8F1 160 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 GCATO75600 419 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 ZMPSTE24O75844 475 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 DXOO77932 396 aaKnown RBP13.14□□□□□ -0.31
LINC00339-202ENST00000416769 CD160O95971 181 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 ADRB3P13945 408 aa13.14□□□□□ -0.31
LINC00339-202ENST00000416769 NME1P15531 152 aaKnown RBP13.14□□□□□ -0.31
LINC00339-202ENST00000416769 SOX5P35711 763 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms