RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RPTNQ6XPR3 784 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 C11orf24Q96F05 449 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 HGH1Q9BTY7 390 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 PTGFRNQ9P2B2 879 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 PRKAG3Q9UGI9 489 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 TLL2Q9Y6L7 1015 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L5A8MUK1 530 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ITGB6P18564 788 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ADRA1DP25100 572 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ELK3P41970 407 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 RORCP51449 518 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SMTNL2Q2TAL5 461 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SPATA2LQ8IUW3 424 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ACTL9Q8TC94 416 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 PTCD2Q8WV60 388 aaKnown RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SCGB3A2Q96PL1 93 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 TMEM109Q9BVC6 243 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 RNF38Q9H0F5 515 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CRISPLD1Q9H336 500 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SH3BP1Q9Y3L3 701 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 AIREO43918 545 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SLC6A4P31645 630 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 RAB27AP51159 221 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 MAPK12P53778 367 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 FAPQ12884 760 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 AUHQ13825 339 aaKnown RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CAMK1Q14012 370 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 PAMR1Q6UXH9 720 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 QSOX2Q6ZRP7 698 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SULF1Q8IWU6 871 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 NINJ2Q9NZG7 142 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 BIRC8Q96P09 236 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 LACRTQ9GZZ8 138 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 NCANO14594 1321 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 MAGI3Q5TCQ9 1506 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ALFQ53S48 1182 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 DUS1LQ6P1R4 473 aaKnown RBP13.01□□□□□ -0.33
COL6A3-206ENST00000409809 KIF18BQ86Y91 864 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 ART4Q93070 314 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 SLC4A5Q9BY07 1137 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 CST11Q9H112 138 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 GTF2A1LQ9UNN4 478 aa13.01□□□□□ -0.33
COL6A3-206ENST00000409809 DHX15O43143 795 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 HLA-DRAP01903 254 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF423Q2M1K9 1284 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF517Q6ZMY9 492 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 ADGRF4Q8IZF3 695 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 CD93Q9NPY3 652 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 CDH22Q9UJ99 828 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF772Q68DY9 489 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 ARMC8Q8IUR7 673 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 DNAJB8Q8NHS0 232 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 NELL1Q92832 810 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SIPA1Q96FS4 1042 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 PANX3Q96QZ0 392 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 KAT8Q9H7Z6 458 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 PCDHGB6Q9Y5F9 930 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 E9PCH4 1651 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ADGRB3O60242 1522 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 PRAMEF33A0A0G2JMD5 474 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 CLCA1A8K7I4 914 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 FOXN1O15353 648 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 PRAMEF10O60809 474 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ASLP04424 464 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 RLN1P04808 185 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 FGFR3P22607 806 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SLC5A3P53794 718 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 FSCN1Q16658 493 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF280DQ6N043 979 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 GADL1Q6ZQY3 521 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SLC30A8Q8IWU4 369 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 MAFIPQ8WZ33 124 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 AGPAT3Q9NRZ7 376 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SNX6Q9UNH7 406 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SAMHD1Q9Y3Z3 626 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 EDF1O60869 148 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 IFNA6P05013 189 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF37AP17032 561 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 GCNT1Q02742 428 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 HDDC3Q8N4P3 179 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ATP6V0D2Q8N8Y2 350 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 STAG3L4Q8TBR4 150 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 DNAJA4Q8WW22 397 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 SLC9A6Q92581 669 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF408Q9H9D4 720 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 PLEKP08567 350 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 ATP5F1P24539 256 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 MARSP56192 900 aaKnown RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 ST8SIA6P61647 398 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 MAPKAPK3Q16644 382 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ADCK2Q7Z695 626 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 ZFP28Q8NHY6 868 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 SLC47A1Q96FL8 570 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 MCCC1Q96RQ3 725 aaPredicted RBP13□□□□□ -0.33
COL6A3-206ENST00000409809 RASSF1Q9NS23 344 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 HEG1Q9ULI3 1381 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 RPS6KA4O75676 772 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 FTH1P02794 183 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 KCNA10Q16322 511 aa13□□□□□ -0.33
COL6A3-206ENST00000409809 GARNL3Q5VVW2 1013 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms