RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SPDYE7PQ495Y7 208 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ABHD17BQ5VST6 288 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 GKAP1Q5VSY0 366 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PLEKHM3Q6ZWE6 761 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 LPCAT2Q7L5N7 544 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 DSG4Q86SJ6 1040 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 WDR63Q8IWG1 891 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CPEB3Q8NE35 698 aaKnown RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 NTN5Q8WTR8 489 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 LRRC59Q96AG4 307 aaKnown RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 INTS12Q96CB8 462 aaKnown RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 MCRS1Q96EZ8 462 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CDCA5Q96FF9 252 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 VPS50Q96JG6 964 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 NLRP4Q96MN2 994 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 WDFY2Q96P53 400 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 MESP1Q9BRJ9 268 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 NUDT22Q9BRQ3 303 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 MLPHQ9BV36 600 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 TUBB2BQ9BVA1 445 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 GPR35Q9HC97 309 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 GPRC5DQ9NZD1 345 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 RNF181Q9P0P0 153 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 SH3BP4Q9P0V3 963 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 FETUBQ9UGM5 382 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CDH22Q9UJ99 828 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 APPL1Q9UKG1 709 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 KIF3AQ9Y496 699 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 INSL6Q9Y581 213 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PCDHGA5Q9Y5G8 931 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PCDHGA1Q9Y5H4 931 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CLDN16Q9Y5I7 305 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CDY1Q9Y6F8 540 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 SCRIBQ14160 1630 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CCDC187A0A096LP49 1063 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 GOLGA6L10A0A0M3HER8 536 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 A0A1W2PQF6 199 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 OR6C76A6NM76 312 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TBKBP1A7MCY6 615 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF785A8K8V0 405 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CDRT15L2A8MXV6 281 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 UBXN8O00124 270 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 LEFTY2O00292 366 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TLR2O60603 784 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 HNRNPCL1O60812 293 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC43A1O75387 559 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ITGA10O75578 1167 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TPPPO94811 219 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 IFNB1P01574 187 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 GABRB1P18505 474 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CCNA2P20248 432 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 VIPR2P41587 438 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 C21orf58P58505 322 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 UFM1P61960 85 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TUBB4BP68371 445 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PRAMEP78395 509 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 FAM189BP81408 668 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CSHL1Q14406 222 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 HFEQ30201 348 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 BEAN1Q3B7T3 259 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CRY2Q49AN0 593 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC9B1Q4ZJI4 515 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC39A12Q504Y0 691 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CST9LP1Q5W188 147 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 MSANTD2Q6P1R3 559 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SARM1Q6SZW1 724 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 RGS9BPQ6ZS82 235 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF365Q70YC5 407 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 BHLHA9Q7RTU4 235 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 UBE3BQ7Z3V4 1068 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 KBTBD6Q86V97 674 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ARHGAP12Q8IWW6 846 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF366Q8N895 744 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 RTL3Q8N8U3 475 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 OR52K2Q8NGK3 314 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CTNNBL1Q8WYA6 563 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 POMGNT1Q8WZA1 660 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF75CPQ92670 426 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CORO2AQ92828 525 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 DDX17Q92841 729 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ITFG2Q969R8 447 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 KLHL29Q96CT2 875 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 FAM210AQ96ND0 272 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PPP1R10Q96QC0 940 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PACSIN1Q9BY11 444 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TRIM7Q9C029 511 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 HSD3B7Q9H2F3 369 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC32A1Q9H598 525 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SYNPO2LQ9H987 977 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 FBXO34Q9NWN3 711 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 WSB2Q9NYS7 404 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 MPP6Q9NZW5 540 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CDYLQ9Y232 598 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 C2CD2Q9Y426 696 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CHST2Q9Y4C5 530 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 GPR75-ASB3A0A0A6YYF3 556 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PIPSLA2A3N6 862 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 OR2A25A4D2G3 310 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TEX33O43247 280 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 BBOX1O75936 387 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms