RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 KIAA1958Q8N8K9 716 aa27.2■■□□□ 1.94
MSX1-201ENST00000382723 ACDQ96AP0 544 aa27.2■■□□□ 1.94
MSX1-201ENST00000382723 EBNA1BP2Q99848 306 aaKnown RBP27.2■■□□□ 1.94
MSX1-201ENST00000382723 CENPHQ9H3R5 247 aa27.2■■□□□ 1.94
MSX1-201ENST00000382723 THG1LQ9NWX6 298 aaKnown RBP27.2■■□□□ 1.94
MSX1-201ENST00000382723 OBP2AQ9NY56 170 aa27.2■■□□□ 1.94
MSX1-201ENST00000382723 TRIM24O15164 1050 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 OPA1O60313 960 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 ADH1CP00326 375 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 ABHD2P08910 425 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 POU3F3P20264 500 aaPredicted RBP27.19■■□□□ 1.94
MSX1-201ENST00000382723 ADRA1AP35348 466 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 MTHFRP42898 656 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 SCNN1BP51168 640 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 PLK1P53350 603 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 CDH17Q12864 832 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 KRT71Q3SY84 523 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 STAMBPL1Q96FJ0 436 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 VPS45Q9NRW7 570 aa27.19■■□□□ 1.94
MSX1-201ENST00000382723 PABPC1P11940 636 aaKnown RBP27.18■■□□□ 1.94
MSX1-201ENST00000382723 PHBP35232 272 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 CTSOP43234 321 aaPredicted RBP27.18■■□□□ 1.94
MSX1-201ENST00000382723 INO80DQ53TQ3 878 aaPredicted RBP27.18■■□□□ 1.94
MSX1-201ENST00000382723 CERCAMQ5T4B2 595 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 LRCH3Q96II8 777 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 SH3GL2Q99962 352 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 KXD1Q9BQD3 176 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 NOD2Q9HC29 1040 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 BFARQ9NZS9 450 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 XIRP2A4UGR9 3374 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 TLDC2A0PJX2 215 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 LAMP2P13473 410 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 SLCO1A2P46721 670 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 LONRF1Q17RB8 773 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 ALG1LQ6GMV1 187 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 SLC25A41Q8N5S1 370 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 ZNF557Q8N988 423 aaPredicted RBP27.18■■□□□ 1.94
MSX1-201ENST00000382723 EPS8L3Q8TE67 593 aaKnown RBP27.18■■□□□ 1.94
MSX1-201ENST00000382723 PLA2G2FQ9BZM2 168 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 SCUBE2Q9NQ36 999 aa27.18■■□□□ 1.94
MSX1-201ENST00000382723 GOLGA6L10A6NI86 522 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 SMAD6O43541 496 aaKnown RBP27.17■■□□□ 1.94
MSX1-201ENST00000382723 ATP9BO43861 1147 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 NFATC1O95644 943 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 MYZAPP0CAP1 466 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 CHRNA4P43681 627 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 RHOAP61586 193 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 GRM2Q14416 872 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 ATP2A3Q93084 1043 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 TADA1Q96BN2 335 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 RPL10LQ96L21 214 aaKnown RBP27.17■■□□□ 1.94
MSX1-201ENST00000382723 LHX3Q9UBR4 397 aa27.17■■□□□ 1.94
MSX1-201ENST00000382723 SERPINF2P08697 491 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 SP100P23497 879 aaPredicted RBP27.16■■□□□ 1.94
MSX1-201ENST00000382723 SERPINH1P50454 418 aaKnown RBP27.16■■□□□ 1.94
MSX1-201ENST00000382723 GEMIN4P57678 1058 aaKnown RBP27.16■■□□□ 1.94
MSX1-201ENST00000382723 DENND5AQ6IQ26 1287 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 PARM1Q6UWI2 310 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 UNC5AQ6ZN44 842 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 FBF1Q8TES7 1133 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 ARL8AQ96BM9 186 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 GAS2L1Q99501 681 aaPredicted RBP27.16■■□□□ 1.94
MSX1-201ENST00000382723 FAM83CQ9BQN1 747 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 MED4Q9NPJ6 270 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 SAMD15Q9P1V8 674 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 TRIOBPQ9H2D6 2365 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 STK19P49842 368 aaPredicted RBP27.16■■□□□ 1.94
MSX1-201ENST00000382723 COL19A1Q14993 1142 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 RANBP10Q6VN20 620 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 YAF2Q8IY57 180 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 SMRP1Q8NCR6 262 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 CCDC77Q9BR77 488 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 SLC2A11Q9BYW1 496 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 PLAC1Q9HBJ0 212 aa27.16■■□□□ 1.94
MSX1-201ENST00000382723 MYOFQ9NZM1 2061 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 OTOL1A6NHN0 477 aaPredicted RBP27.15■■□□□ 1.94
MSX1-201ENST00000382723 AP3B1O00203 1094 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 INSIG1O15503 277 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 HOXC11O43248 304 aaPredicted RBP27.15■■□□□ 1.94
MSX1-201ENST00000382723 TSHRP16473 764 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 CR2P20023 1033 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 NPY2RP49146 381 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 STAT4Q14765 748 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 SKIDA1Q1XH10 827 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 ATXN7L2Q5T6C5 722 aaPredicted RBP27.15■■□□□ 1.94
MSX1-201ENST00000382723 C12orf40Q86WS4 652 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 MFSD6LQ8IWD5 586 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 E2F7Q96AV8 911 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 NSMCE3Q96MG7 304 aa27.15■■□□□ 1.94
MSX1-201ENST00000382723 XPO6Q96QU8 1125 aaKnown RBP27.15■■□□□ 1.94
MSX1-201ENST00000382723 BCCIPQ9P287 314 aaKnown RBP eCLIP27.15■■□□□ 1.94
MSX1-201ENST00000382723 EXOC1LA0A1B0GW35 172 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 H3BQ06 376 aaPredicted RBP27.14■■□□□ 1.94
MSX1-201ENST00000382723 RASGRF2O14827 1237 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 PIAS1O75925 651 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 PDGFRLQ15198 375 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 FGF14Q92915 247 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 IFT43Q96FT9 208 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 NUDCD1Q96RS6 583 aa27.14■■□□□ 1.94
MSX1-201ENST00000382723 TM6SF2Q9BZW4 377 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms