RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SEMA3AQ14563 771 aa5□□□□□ -1.61
PCDH9-201ENST00000377861 CELF3Q5SZQ8 465 aaKnown RBP5□□□□□ -1.61
PCDH9-201ENST00000377861 MINDY1Q8N5J2 469 aa5□□□□□ -1.61
PCDH9-201ENST00000377861 CSPG4P5Q96PW8 444 aa5□□□□□ -1.61
PCDH9-201ENST00000377861 MAGEH1Q9H213 219 aa5□□□□□ -1.61
PCDH9-201ENST00000377861 MATN3O15232 486 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PRPS2P11908 318 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 H2AFY2Q9P0M6 372 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 NR2E1Q9Y466 385 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 OR6C75A6NL08 312 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 E5RI56 91 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 GMPSP49915 693 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SPICE1Q8N0Z3 855 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SLC43A2Q8N370 569 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CCNYL1Q8N7R7 359 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 NDNQ99608 321 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CPNE5Q9HCH3 593 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 GPC6Q9Y625 555 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 M0QX08 132 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 GABRDO14764 452 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 LRIG2O94898 1065 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FGF1P05230 155 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 VPS41P49754 854 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 DSG4Q86SJ6 1040 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 STYXQ8WUJ0 223 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FEM1CQ96JP0 617 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 M0QYV0 167 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PPP2R1BP30154 601 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FITM2Q8N6M3 262 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ARHGEF38Q9NXL2 777 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CKMT1AP12532 417 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 HAO1Q9UJM8 370 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SETD1BQ9UPS6 1966 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 A0A096LPK6 155 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ESYT3A0FGR9 886 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 NEK3P51956 506 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FAM98CQ17RN3 349 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TLL1O43897 1013 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 KRT34O76011 436 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ATG7O95352 703 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SPDYE1Q8NFV5 336 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 RADILQ96JH8 1075 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ERVW-1Q9UQF0 538 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PCDHGA2Q9Y5H1 932 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SH3PXD2BA1X283 911 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PI4K2BG5E9Z4 385 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SLC37A4O43826 429 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 INCA1Q0VD86 236 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 KIF12Q96FN5 646 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 GORASP1Q9BQQ3 440 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 DUSP16Q9BY84 665 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CLIC5Q9NZA1 410 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 DKK3Q9UBP4 350 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 RNASEH2BQ5TBB1 312 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PDLIM5Q96HC4 596 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 A0A087WZ62 844 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CHST10O43529 356 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PROCP04070 461 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 OR7A2PQ8NGA2 310 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 WNK4Q96J92 1243 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 OXSMQ9NWU1 459 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TMCC3Q9ULS5 477 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SMIM35A0A1B0GVV1 85 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 MYCNP04198 464 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SLC7A2P52569 658 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 NSUN2Q08J23 767 aaKnown RBP eCLIP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 RBBP4Q09028 425 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TTLL12Q14166 644 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 KBTBD6Q86V97 674 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TAS1R2Q8TE23 839 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ING4Q9UNL4 249 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ASB3Q9Y575 518 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CLDN11O75508 207 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 LIMK2P53671 638 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 KLF1Q13351 362 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CDRT15Q96T59 188 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 POLR1EQ9GZS1 481 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ETS1P14921 441 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 AP1S2P56377 157 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 MRPL28Q13084 256 aaKnown RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TTMPQ5BVD1 217 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 THAP5Q7Z6K1 395 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FAM13CQ8NE31 585 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 BTBD3Q9Y2F9 522 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 SNX13Q9Y5W8 968 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ALDH2P05091 517 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 CDC42P60953 191 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 HSDL1Q3SXM5 330 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FAM126BQ8IXS8 530 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 RPAP3Q9H6T3 665 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 WDR41Q9HAD4 459 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 IFI35P80217 286 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 FAM45AQ8TCE6 357 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 MYCP01106 439 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 KLRC2P26717 231 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 PRORSD1PA6NEY8 169 aa4.99□□□□□ -1.61
PCDH9-201ENST00000377861 TRIM3O75382 744 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ENO2P09104 434 aaPredicted RBP4.99□□□□□ -1.61
PCDH9-201ENST00000377861 ARL1P40616 181 aaPredicted RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms