RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SRP68Q9UHB9 627 aaKnown RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 HERC5Q9UII4 1024 aaKnown RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 GTF2A1LQ9UNN4 478 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 C19orf53Q9UNZ5 99 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 EFCAB8A8MWE9 144 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ITM2AO43736 263 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 SH3BP5O60239 455 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CBX6O95503 412 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CSF1P09603 554 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CYP4B1P13584 511 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ARSAP15289 507 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 NAGAP17050 411 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 DPP6P42658 865 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CLCNKBP51801 687 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 OAZ1P54368 228 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PRKAA2P54646 552 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ARL4CP56559 192 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF718Q3SXZ3 478 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 TANGO2Q6ICL3 276 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 DGAT2L7PQ6IED9 249 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 H1FNTQ75WM6 255 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 MOGAT3Q86VF5 341 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 PALB2Q86YC2 1186 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ANKRD18AQ8IVF6 992 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CPT1BQ92523 772 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RSC1A1Q92681 617 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 ZSCAN31Q96LW9 406 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 TRAPPC9Q96Q05 1148 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 GFM1Q96RP9 751 aaKnown RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 CADM1Q9BY67 442 aaKnown RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 NPFFR1Q9GZQ6 430 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 TAF1DQ9H5J8 278 aaPredicted RBP2.35□□□□□ -2.03
VPS13A-206ENST00000376646 RRN3Q9NYV6 651 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 NLKQ9UBE8 527 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 MST1RQ04912 1400 aa2.35□□□□□ -2.03
VPS13A-206ENST00000376646 KDM4EB2RXH2 506 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-206ENST00000376646 B9A039 149 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 IRAK2O43187 625 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 KCNJ13O60928 360 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 SOX30O94993 753 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 PLGP00747 810 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-206ENST00000376646 PYGLP06737 847 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 AMTP48728 403 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 DSC1Q08554 894 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 CTTNQ14247 550 aaKnown RBP2.34□□□□□ -2.03
VPS13A-206ENST00000376646 TBRG1Q3YBR2 411 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 C9orf50Q5SZB4 431 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 GFI1BQ5VTD9 330 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 C8orf82Q6P1X6 216 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-206ENST00000376646 SPSB3Q6PJ21 355 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 MON1BQ7L1V2 547 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 SERPINA11Q86U17 422 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 PAF1Q8N7H5 531 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 SPATA20Q8TB22 786 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 BICD2Q8TD16 824 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 EIF2AK1Q9BQI3 630 aaKnown RBP2.34□□□□□ -2.03
VPS13A-206ENST00000376646 THAP1Q9NVV9 213 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 KIF17Q9P2E2 1029 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 HDAC6Q9UBN7 1215 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 SEL1LQ9UBV2 794 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 BAG5Q9UL15 447 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 OSGIN2Q9Y236 505 aa2.34□□□□□ -2.03
VPS13A-206ENST00000376646 H0Y3Z8 333 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 EIF3FO00303 357 aaPredicted RBP2.34□□□□□ -2.04
VPS13A-206ENST00000376646 TIMM23O14925 209 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 ASAP2O43150 1006 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 WDHD1O75717 1129 aaPredicted RBP2.34□□□□□ -2.04
VPS13A-206ENST00000376646 AGR2O95994 175 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 HLA-DQA2P01906 255 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 CKMT1AP12532 417 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 MT3P25713 68 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 CUL4BQ13620 913 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 SLC39A14Q15043 492 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 KIF26BQ2KJY2 2108 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 KRTAP24-1Q3LI83 254 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 FBXO43Q4G163 708 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 ALFQ53S48 1182 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 ANKRD45Q5TZF3 282 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 CYP26C1Q6V0L0 522 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 GALNT7Q86SF2 657 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 FTSJ3Q8IY81 847 aaKnown RBP2.34□□□□□ -2.04
VPS13A-206ENST00000376646 LINS1Q8NG48 757 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 RASSF8Q8NHQ8 419 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 HDAC7Q8WUI4 952 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM18Q96B42 140 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 RTP4Q96DX8 246 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 TXNDC15Q96J42 360 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 UBXN10Q96LJ8 280 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 SAYSD1Q9NPB0 183 aa2.34□□□□□ -2.04
VPS13A-206ENST00000376646 IGLV5-52A0A0A0MRZ9 124 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 LDB3O75112 727 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 CST5P28325 142 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 C21orf33P30042 268 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 MXI1P50539 228 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 SEC61A1P61619 476 aaKnown RBP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 POU5F1BQ06416 359 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 DDR1Q08345 913 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 IL13RA2Q14627 380 aa2.33□□□□□ -2.04
VPS13A-206ENST00000376646 SF3B4Q15427 424 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS13A-206ENST00000376646 TAF12Q16514 161 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms