RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 MT-ND3P03897 115 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 GLDCP23378 1020 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 PTPN4P29074 926 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 GARSP41250 739 aaKnown RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 NR2C2P49116 596 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 RASSF2P50749 326 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 ERVFC1P60507 584 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 PABPC1LQ4VXU2 614 aaKnown RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 MS4A13Q5J8X5 152 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 CCNJLQ8IV13 435 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 PRR11Q96HE9 360 aaPredicted RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 SERAC1Q96JX3 654 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 MIPEPQ99797 713 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 C11orf84Q9BUA3 381 aaPredicted RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 HEY2Q9UBP5 337 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 SCML2Q9UQR0 700 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 EFR3BQ9Y2G0 817 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 LRRC42Q9Y546 428 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 CFAP69A5D8W1 941 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 HNRNPRO43390 633 aaKnown RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 CCNG1P51959 295 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF235Q14590 738 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 EML3Q32P44 896 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 EFHBQ8N7U6 833 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 DNAJC9Q8WXX5 260 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 MFSD3Q96ES6 412 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 QKIQ96PU8 341 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 FAM111AQ96PZ2 611 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 FETUBQ9UGM5 382 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 CDH22Q9UJ99 828 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 DNMT3LQ9UJW3 386 aa13.25□□□□□ -0.29
COL18A1-201ENST00000342220 ZFP37Q9Y6Q3 630 aaPredicted RBP13.25□□□□□ -0.29
COL18A1-201ENST00000342220 C2orf71A6NGG8 1288 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CXorf49A8MYA2 514 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TM9SF1O15321 606 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 VNN2O95498 520 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CD86P42081 329 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 SLC10A7Q0GE19 358 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 WASHC5Q12768 1159 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 PRPSAP1Q14558 356 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TAZQ16635 292 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 HSP90AA5PQ58FG0 334 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TMC5Q6UXY8 1006 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 NAT16Q8N8M0 369 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 OR6P1Q8NGX9 317 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 POF1BQ8WVV4 589 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 ABTB1Q969K4 478 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TSSK1BQ9BXA7 367 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 VCX3BQ9H321 246 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 SMOC2Q9H3U7 446 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 VCX3AQ9NNX9 186 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CHRAC1Q9NRG0 131 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 ARL8BQ9NVJ2 186 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 BFARQ9NZS9 450 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CPQQ9Y646 472 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 DCLK1O15075 740 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 INPPL1O15357 1258 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CAPN15O75808 1086 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 LAG3P18627 525 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 IRS1P35568 1242 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 SLC39A11Q8N1S5 342 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 NAT14Q8WUY8 206 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 ARNTL2Q8WYA1 636 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 C8orf48Q96LL4 319 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 ZNF778Q96MU6 729 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 VPS11Q9H270 941 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 FBXO6Q9NRD1 293 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 BCLAF3A2AJT9 711 aaKnown RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TRIM49D1C9J1S8 452 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 PDLIM1O00151 329 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TGM5O43548 720 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 BGNP21810 368 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 SLC11A2P49281 568 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 MLLT6P55198 1093 aaPredicted RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 DSC2Q02487 901 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 DPYSQ14117 519 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 OR52E8Q6IFG1 317 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 BLOC1S5Q8TDH9 187 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 SNRNP27Q8WVK2 155 aaKnown RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 IRGQQ8WZA9 623 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 MRPS31Q92665 395 aaKnown RBP13.24□□□□□ -0.29
COL18A1-201ENST00000342220 RMDN1Q96DB5 314 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 CYTH2Q99418 400 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TRIM55Q9BYV6 548 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 ZYG11BQ9C0D3 744 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 BRD8Q9H0E9 1235 aa13.24□□□□□ -0.29
COL18A1-201ENST00000342220 TRAFD1O14545 582 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 SUPT3HO75486 399 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CXCL10P02778 98 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 ETS2P15036 469 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 RCN2Q14257 317 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CACUL1Q86Y37 369 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 RPL10LQ96L21 214 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 TRAPPC9Q96Q05 1148 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 SMIM14Q96QK8 99 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 TRIM62Q9BVG3 475 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CADM1Q9BY67 442 aaKnown RBP13.23□□□□□ -0.29
COL18A1-201ENST00000342220 CRISPLD2Q9H0B8 497 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 PRM3Q9NNZ6 103 aa13.23□□□□□ -0.29
COL18A1-201ENST00000342220 SAR1AQ9NR31 198 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms