RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 C11orf42Q8N5U0 333 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 IL22RA1Q8N6P7 574 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 IPMKQ8NFU5 416 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HMGCLL1Q8TB92 370 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 IFI44Q8TCB0 444 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PAQR8Q8TEZ7 354 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 NTAN1Q96AB6 310 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MVB12AQ96EY5 273 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LRRC3BQ96PB8 259 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LYSMD1Q96S90 227 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 BACH2Q9BYV9 841 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 FRMD8Q9BZ67 464 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PLEKHF2Q9H8W4 249 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 RASSF1Q9NS23 344 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 BLOC1S4Q9NUP1 217 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TCEAL9Q9UHQ7 104 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CNTN6Q9UQ52 1028 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLC27A5Q9Y2P5 690 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 RNF114Q9Y508 228 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PRRC2AP48634 2157 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SRCAPQ6ZRS2 3230 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 DYNC1H1Q14204 4646 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 EML6Q6ZMW3 1958 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 LYSTQ99698 3801 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CEP295Q9C0D2 2601 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PODXLO00592 558 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 GPR37O15354 613 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CTAG2O75638 210 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 USP1O94782 785 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CNOT4O95628 575 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 FESP07332 822 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 GUSBP08236 651 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CYP11B2P19099 503 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CD53P19397 219 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 EIF2S2P20042 333 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PTPN4P29074 926 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SLC6A1P30531 599 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CHRNB4P30926 498 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 HSPA9P38646 679 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 KIR3DL2P43630 455 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 STT3AP46977 705 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 COPB1P53618 953 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ATXN3P54252 364 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 RPL6Q02878 288 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 FOXD4Q12950 439 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 AIMP2Q13155 320 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PICALMQ13492 652 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TRIM14Q14142 442 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SQLEQ14534 574 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 INPP5AQ14642 412 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MYBPC3Q14896 1274 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MYLK3Q32MK0 819 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 AFMIDQ63HM1 303 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SAXO2Q658L1 398 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 B4GALNT4Q76KP1 1039 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 BHLHA15Q7RTS1 189 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 DTX2Q86UW9 622 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ZBTB8OSQ8IWT0 167 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MB21D2Q8IYB1 491 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 KLHDC8AQ8IYD2 350 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MARVELD2Q8N4S9 558 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TSPYL6Q8N831 410 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 BCORP1Q8N888 145 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PSD4Q8NDX1 1056 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 C16orf52Q8NHV5 167 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 GRIN3AQ8TCU5 1115 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 RHBDD1Q8TEB9 315 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 RSC1A1Q92681 617 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TNFRSF25Q93038 417 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 VTI1AQ96AJ9 217 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 LGR4Q9BXB1 951 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TEX101Q9BY14 249 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ZSWIM4Q9H7M6 989 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CATSPERBQ9H7T0 1116 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PRKRIP1Q9H875 184 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 LCMT1Q9UIC8 334 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CPSF3Q9UKF6 684 aaKnown RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CROTQ9UKG9 612 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TBC1D30Q9Y2I9 924 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 OR51B4Q9Y5P0 310 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 STON1Q9Y6Q2 735 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SLC4A4Q9Y6R1 1079 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TENM4Q6N022 2769 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 MUC6Q6W4X9 2439 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SLC12A8A0AV02 714 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TCAF2A6NFQ2 919 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 AQP7O14520 342 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 DVL2O14641 736 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TTI1O43156 1089 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 PRPF4O43172 522 aaKnown RBP eCLIP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 DYRK3O43781 588 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 WDR1O75083 606 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 TJP3O95049 919 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 KLF8O95600 359 aaPredicted RBP1.6□□□□□ -2.15
LINC00643-201ENST00000334389 SERPINC1P01008 464 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 LIFP15018 202 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 IL11P20809 199 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 ITPKAP23677 461 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CALML3P27482 149 aa1.6□□□□□ -2.15
LINC00643-201ENST00000334389 CEACAM8P31997 349 aaPredicted RBP1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms